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FASTA Sequence PDB Format mmCIF Format
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8WA0

The cryo-em structure of the nicotiana tabacum pep-pap-tec1

PDB DOI: 10.2210/pdb8wa0/pdb

Classification: TRANSCRIPTION
Organism(s): Nicotiana Tabacum , Synthetic Construct

Deposited: 2023-09-06
Deposition Author(s): Wu, X.X. , Zhang, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

8wa0
Literature

The cryo-em structure of the nicotiana tabacum pep-pap-tec1

Wu, X.X. , Zhang, Y.

Primary Citation of Related Structures: 8WA0


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha A 337 Nicotiana Tabacum , Synthetic Construct MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEYSTITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAKLIKNKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKRILGILEKYFVIDLAKNKF
Fructokinase-like 2, chloroplastic I 648 Nicotiana Tabacum , Synthetic Construct MAALSFSLLSTLPRQHLHWNFYPNMKVMQLQDLGLKNKWVLMAVSKEGTPEAIAKELSKTEVFGAGKKTVRISKRAPVMARRKKVVETSNDDPVNVEEAENTSGSTEEPKKTQRRTRKKKEIVESSFGDSISDAEGNVIDAEAVTEPESSAKPKKTRRTRKKKETVVSTFEDSTLDVEGNVTDEEVLPTSGSSEGSVEIRKRTSKKAASSSSSLEKEPTQKVTRRRRKKVNNLEDEGSQTELSDIEEELHVANADADSEEELDFDGGEDISFSYGWPPLVCCFGAAQHAFVPSGRPSNRLVDHEWHERMKDAIWDPEKFTRAPGGCSSNVAVALASLGGKVAFMGKLGDDDFGQSLVYFMNINKVQTRSVRLDSKKATAITHMKIGKRGGLRMTTTKPSAEDSLLKSEINIDVLKEAKMFYFNTFSMLDPNMRLTTLRATKISKKLGGVVFYDVNLPFPLWESGDKAKTFIQQAWDLADIIEVTKQELEFLCGIKPSERFDTKDNDRSKFTHYPPEVIAPLWHENLKVLFVTNGTSKIHYYTKEHNSAVLGLEDVPLTPYTSDMSASGDGIIAGIIRMLTVQPHLMTDKGYLERTLKYAISCGVVDQWLQARRLGYPPKEGMEDDVVPDDHGIKSVTEREYRILVPVS
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14-like isoform X2 J 507 Nicotiana Tabacum , Synthetic Construct MVSSTILIQQPTNLFHQPEFQHQLWRQGCAAPLQKQPIIICSSNKGRSRPLRVTASANGAATSSTLEGYDSSPTPSAFPLFTPPSQPHDTPASQLELADPDFYKIGYVRSFRAYGIEFREGPDGYGVFASRDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPVGHPIFDIINSTNPETDSDLRLACLLLYAFDCKDNFWQLYGDFLPSDDECTSFLLATEEDLLELQDEKLASTMREQQQRALEFWEKNWHSAVPLKIKRLARDPERFIWAMCIAQSRSINLQMRIGALVQDANLLVPYADMMNHSFQPNCFFHWRFKDRMLEVMINAGQRIRKGDEMTVDYMAGQKNNFFMQRYGFSSPVNPWDVIHFTGDAKIHLDTFLSVFNISGLPGEYYHNSRLSNDGDSFVDGAIIAAARTLPTWSDGDLPPIPSLERKAVKELQEECHQMLAEFPTTSDEDQKILDSMPDCRRTLEAAIKYRLHRKLLIEKVIQALDIYQDRILF
PAP8(pTAC6) K 331 Nicotiana Tabacum , Synthetic Construct MSAAQLFFPLPPNLSTFSTTPSSQALFTISFAKTISSNPNSVKQSLTTKRRRDFRVFADDGDADGGGPDDYDMDEDEVEEADNKKDFDVDYDTLLGGASLTVAATGDDIAMVHSSSFVFTQGWDSEKIVDYRINEEEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPRVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPMYKSEREVSKVFLTKHYRNRRAGDPEFALDFEEIYVIDSKTKSITRAKVVVTVPGGRNRDRKNDLLVIRDNGTSFKIIPSEERDDPTTVIEKEEWKKSRQDMERHLRKLRDFSVSNWF
superoxide dismutase L 303 Nicotiana Tabacum , Synthetic Construct MMAATASTTLTSAFLPFQGFRESCRTLNWRTHKKQFARKAGPVKVTAKFELMPPPYPMNALEPHMSHTTFEYHWGKHHRAYVDNLNKQIDGTELDGMTLEDIILITYNRGDLLPPFNNAAQAWNHQFFWESMKPSGGGKPSGELLQLINRDFGSFEAFVKEFKAAAATQFGSGWAWLAYKANRLNVGNTSNPHPTDEDKKLVVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFRNRRPDYISIFMEKLVSWEAVSSRLEVAKAKAAEREEEEERKKREKEEEYKAGGEVREMYVESTDSDAE
Thioredoxin-like protein CITRX1, chloroplastic M 178 Nicotiana Tabacum , Synthetic Construct MQAATLSFHPLAPPPQTSACHFSSNQRKYSLFSYTCPTPRPSLLSTQTLSRKSICKPPAVATGKYVREDYLVKKVSAKDIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYESNALIVKVDTDDEYEFARDMQVRGLPTLYFISPDPNKDAIRTEGLIPIQMMRDIINNDL
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like N 770 Nicotiana Tabacum , Synthetic Construct MPFTLFSLPPFPSLLHHNPPPLQFKPFTSLHHLRLKYPTTLTTVSAIGADGKYYPNPSDDDPPEAPEDSMHGVNKFQQIQRQAAKAKKQQEELFKKEQSIFVNALADVEDAPDNPALNDNDNSGDDLFGEIDKAIALKRKEFVKQGLLKPNPPKNSTLVESEVENVDELEPEEVVDLEEIDGLSGLAEIEESDEEKSDFEVSDDMGKSEFSDLSSFDIDFDEFGKTKPRIVEPKFRMSLAELLDESRVVPLSVYGDLEVGISGVQHDSRLVESGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNAVLAVLAASFYRHPSKSMTLIGITGTNGKTTTSYLIKAMYEAMGLRTGMLSTVGYYIYGDNKLESPHTTPDAVLVQKLMAKMVHNGTEALVMEASSHGLALGRCDKVDFDIAVFTNLTRDHLDFHGTEEEYRDAKAKLFARMVDPARHRKIVNIDDPNAAFFLAQGNPDVPIVTFAMENKSADVHPLKFQLSLFETQVLVNTPQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVKGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDYVRELGPRRVITVFGCAGESDRGKRPIMAKIATDKSDVTILTSDNPKTEDPLDILDDMLAGVGWSMQDYLKHGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDIVVVAGKGHETYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2 O 151 Nicotiana Tabacum , Synthetic Construct MQKIAAVENTRRLNFSIRSQSASNSKNEGRGGRRIWRRRKLTKKDETLDAKMERIPFLEEQVRKIRDGGKLLTMDIHRLLLNEDNRFDFVNEIAAEAKQYVENNRDEYGAKKAILHVLSNRMNDAGVYRAEAYMESDPFKPGPGYLKDELL
PAP13(pTAC18) P 143 Nicotiana Tabacum , Synthetic Construct MASFITMPALSYLSTNTSSLERTNFRPSSRGYQGVRAMRTEKPLEELYNVRVERNVTKDRLMELGVPRWSMWKTGKCKLPWDWHVDQLVYIEEGEVRVVPEGSQRFMQFVAGDLVRYPKWFEADLYFNDFYQERYSFRAYGDS
DNA-directed RNA polymerase subunit beta B 1070 Nicotiana Tabacum , Synthetic Construct MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIFLSFLSDKERKKIGSKENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFGMGALDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLYLSPGRDEYYMVAAGNSLALNQDIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGALAIAEREGRVVYTNTDKILLAGNGDILSIPLVIYQRSNKNTCMHQKLQVPRGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPEKVTNEIPHLEAHLLRNLDKNGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKRGGSSYNPETIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA
DNA-directed RNA polymerase subunit beta'' C 1388 Nicotiana Tabacum , Synthetic Construct MAERANLVFHNKAINGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIFIQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVIAEIRAGISTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGRPCRSSLVYLSIHKDQDQMNAHFLSGKRRYTSNLSVTNDQARQKLFSSDFSGKKEDRIPDYSDLNRIICAGQYNLVYSPILHENSDLLSKRRRNKFIIPLHSIQELENELMPCSGISIEIPVNGIFRRNSILAYFDDPRYRRKSSGIIKYGTVETHSVIKKEDLLEYRGVKEFRPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIHFPGETDKISRHTGVLIPPGTGKRNSKESKKVKNWIYVQRITPSKKKFFVLVRPVVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSIKKDPLIPIRNSLGPLGTSLPIENFYSSYHLITHNQILVTNYLQLDNLKQTFQVIKFKYYLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFICENVCIAKNGPPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPSKQHNNIPLETKKKNLFEGEMRDILFHHKKLFDSCLSKNFHDIPEQSFIGFNDS
PAP1(pTAC3) D 892 Nicotiana Tabacum , Synthetic Construct MAGISIHYLPFNSKFTLPIPRPSISRSIKASVSSQPRKTRRRKQTQQQQHQLKTAEDDGSMASGTEKVLRLVFMEELMERARNADSKGVSQVIYDMIAAGLSPGPRSFHGFVVSHVLNRDNDGAMHALRRELSEGLRPLHETFLALVRLFGAKGLATRGLEILAAMEKLKYDIRQAWLVLVEELVRSNHLEDANKVFLKGAEGGLRATDEIYDLLIEQDCKVGDHSNALTIAYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGEDHMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPNVRTYALLVECFTKYCVVREAIRHFRGLKNFEGGTQVLYNDGKYGDPLSLYLRALCREGRIVELLEALEAMAKDNQPIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYVAEGGLTGDRKRWVPRRGKTPLDPDAEGFIYSNPRETSFKQRCLEEWRLHHRKLLKTLHNEGPSILGKISESDYIRLVERLRKIIKGPEQNALKPKAASKMIVSELKEELEAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDELISRIKLHEGNTEFWKRRFLGEGLNENHVQQSEIIDLEPTDVVDDTDDAVDDISKEAEDDEAEDDEAQDEEEEVEQAESQPEVGDRKDKEVEAAKPLQMIGVQLLKDSDQTASSSRKSRRRLSRVAAVDDDDDDWFPLDIQEAFVEMRKRNIFDVSDMYTITDAWGWTWEKEIKNKAPQRWSQEWEVELGIKVMTKVIELGGTPTIGDCAVILRAAVRAPMPSAFLNILQTTHSLGYVFGSPLYDEIITLCLDLGELDAAIAIVADLETSGIKVPDETLDRVISARQSSDTPVNGSQ
Pentatricopeptide repeat-containing protein At1g74850, chloroplastic-like E 860 Nicotiana Tabacum , Synthetic Construct MSLSCNSFSPVFTPVPPSHRFLFPAKIPNYGKLSPVHRRLLLTVAVRAKPKELILGNPTVTVEKGKYSYDVETLINKLSSLPPRGSIARCLDTFKNKLSLTDFSHVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTLMIGILGREGLLDKAFEIFDEMPSHSVARTVFSYTAIINAYGRNGQYGTSLQLLEKMKQEKIIPSILTYNTVINSCARGGHEWEGLLSLFAEMRHEGIQPDLVTYNTLLSACSSRGLGDEAEMVFRTMNEAGILPDVTTYSYLVDTFGKLGKLEKVSELLMEMEAGGTSPEVTSYNVLLEAYAHSGSMKEAMDVFRQMQTAGCVANAETYSVLLNLYGKNGRYDQVRDLFLEMKMSNTEPDADTYNILIQVFGEGGYFKEVVTLFHDMVEEKVEPNMETYEGLIYACGKGGLHDDAKRILLHMNGQGLVPSSKVYTGVIEAYGQAALYEEAVVAFNTMNEVGSRPMVETFNSLIHAFAKGGLYKESEAIWFRMGEVGVPRNRDSFNGMIEGYRQGGQFEEAIKAYVEMEKARCDPDERTLEAVLSVYCFAGLVDESEEQFQEIKSLGIQPSIICCCMMLAIYAKSERWNMAHELLNDVMTNKTSDMHQVIGQMIHGDFDDENNWQMVEYVFDKLNSEGCGLSMRFYNTLIEALWWLGQKERAARVLNEATKRGLFPELFRRNKLVWSVDVHRMWPGGACTAISVWLNDMEELFHKGEELPQLASVVVVRGQTEKSSITRDFPVAKAAYSFLKDTVSSSFCFPGWNKGRIVCQKTQLKRIFSSAEPSSGSSKGDRLIPLSNSPISLLGTQTSVSDAKRSESANADSKRSTKSDSELMASSV
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10-like F 682 Nicotiana Tabacum , Synthetic Construct MQTLQSSSLFFTFPSSKTLLKPQSSKFSSFSLFPSSLSKPSRPLTLHCFSSDEFPVGDDDAFLEAFGPKEKESEEEARRKNWVDRGWAPWEEILSPEANFARKSLNEGEEVALQSPEAIEAFKMLSPNYRKKKISDMGITEDEYYAKQFEIKGEIPEPLSTMWAGPLVVRHVPPRDWPPRGWEVDKKELEFIRETHKLQSVRVDYDKVEEMVKMETDDMGLDRYKMFLKQYNEWVAANKDRLEKESYKYDQDYYPGRRKRGKDYQDGMYELPFYYPGQICAGKVTAIHLYQGAFVDIGGVHDGWVPIKRNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFIDPNIDHLIFNRFDFAPIFHRDEDTNLDELRRDCGRQPLPRKDPGVKVEEEPLLSNHPYVDKLWQIHNAEQMILDDMEANPVKYKGKNLTELTDDEDFDEENRIEYSKAYYKKALLPKMITKVSVKELDLEAAFAERQHHNKLRMEAQERGEVYKIPKLRRNIEMDEYDFIHWRRSLEEREAMLRDISCRRALGLPLEEPGRYVDPSAFGKDQYDPDSPLYRYDYWGEPKNSEKSKQERMTDVHNKSIVGKGTVWYEMAYEDAVKERMQMEAQGIVRELYDEDSDSDEVGTDDDDDDEEDFDYSILGDPSANVSNQPYVNGTESRLSDEGMFEDKS
superoxide dismutase G 266 Nicotiana Tabacum , Synthetic Construct MSWSSCNSLCTSSSRQLLVTTDLSSQLNIPSRLSNVKRSLHGHHGVPKVFAYYGLKTPPYKLDALEPYMSQKMLEVHWGEHHRSYVEALNKQLEKNDILYGCTMEELIKVTYNNGNPLPEFSDAAQVWNHDFFWESMQPGGGDMPKLGLLQQIEKDFGSFTNFREKFTEAALALFGSGWIWLVLKREEKRLAIVKTSNAVNPLVWNDIPLIGLDLWEHAYYLDYKNDKAKYVNVFMNHLVSWDAALGRMARAQAFVNLGEPKIPVA
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like H 531 Nicotiana Tabacum , Synthetic Construct MASVLSTSLYQDRGLRTMVSTDGFVPSFCCPYRKTLFTGTIPVSIWQFKLVSSSPFQKAPLAPCIKCENKEKDQASQGSFEQVSVERYPYHSYMDSTSGQLEPASGARASIPGQEYWPEGTASRVRAARAPEPTGTSTGTPSYGKNPGSRRKKYKASAAASKPSEINIISDDSAESPDNLPEEPKDLSSEYVIYQPEQEEEELTGYELDKRLGRPHPFIDPKTKKKIEKPLTSEELWWNWRKPEKEQWSRWQRRRPDVETVFLKAMAETGQVKLYGDHPTLTETALYRARRHLYKKERLQAEKEKLEKIGPIAYYSEWVQAWKKDTSREAIQKHFEETGEDENTQLIEMFCHQTDREYRIMMGTDIRIPRDPLAMRMREDQIKQIWGGDPVYPTINYIQDPDEVIDYRGPDFHEPTPNMLAYLKEHGKIISREELEKILAKEKTEEIEVAEIDEAMARAVDIGENDDEEEGSDAEVEEGDEKITRNWSVLKSNPELRKSKEKPKKKDMSLEEAVDDSENLTDFLMDFDEDE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (48-mer) r 48 NA CACTCTACCGATAAGCAGAATTACCTCTCGATCCTGTGCTAGACACGC
RNA (20-mer) s 20 NA ACAGAUGUCCUCGAGAGGUA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-09-06
Deposition Author(s): Wu, X.X. , Zhang, Y.