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8VIO
Structure of mycobacterium smegmatis hflx bound to a 70s ribosome
PDB DOI: 10.2210/pdb8vio/pdb
Classification: RIBOSOME Organism(s): Epstein-Barr Virus Strain Ag876
Deposited: 2024-01-05 Deposition Author(s): Agrawal, R.K. , Banavali, N.K. , Koripella, R.K. , Majumdar, S. , Manjari, S.R. , Sharma, M.R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.26 Å
Structure of mycobacterium smegmatis hflx bound to a 70s ribosome
Agrawal, R.K. , Banavali, N.K. , Koripella, R.K. , Majumdar, S. , Manjari, S.R. , Sharma, M.R.
Primary Citation of Related Structures: 8VIO
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S19 | Y | 93 | Epstein-Barr Virus Strain Ag876 | MPRSLKKGPFVDDHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTEAMVGHKLGEFAPTRTFKGHIKDDRKSKRR |
| 50S ribosomal protein L19 | Q | 113 | Epstein-Barr Virus Strain Ag876 | MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNIDHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR |
| 50S Ribosomal Protein L21 | S | 103 | Epstein-Barr Virus Strain Ag876 | MATYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGIK |
| 50S ribosomal protein L24 | V | 105 | Epstein-Barr Virus Strain Ag876 | MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI |
| 50S ribosomal protein L25 | W | 215 | Epstein-Barr Virus Strain Ag876 | MAKTANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGAGETGAAEAPAEEAPAEEPAE |
| 50S ribosomal protein L27 | X | 88 | Epstein-Barr Virus Strain Ag876 | MAHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNIVPVARPEA |
| 50S ribosomal protein L29 | Z | 77 | Epstein-Barr Virus Strain Ag876 | MAVGTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELGLASGPAGEES |
| 50S ribosomal protein L9 | H | 151 | Epstein-Barr Virus Strain Ag876 | MKLILTAEVEHLGAAGDTVEVKDGYGRNYLLPRGLAIVASRGAERQAEEIRRARESKVIRDIEHANELKTALEGLGDVTLSVNAAGDTGKLFGSVTAADVVNAIKKAGGPNLDKRTVQLAKAHIKSVGTHPVTVKLHTGVEAKVSLNVVAQ |
| 50S Ribosomal Protein L37 | 3 | 24 | Epstein-Barr Virus Strain Ag876 | MAKRGRKKRDRKHSKANHGKRPNA |
| 50S ribosomal protein L32 | B | 57 | Epstein-Barr Virus Strain Ag876 | MAVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLDKR |
| 50S ribosomal protein L2 | C | 278 | Epstein-Barr Virus Strain Ag876 | MGIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGKGGRNAHGRITTRHKGGGHKRAYRVIDFRRHDKDGVNAKVAHIEYDPNRTANIALLHYLDGEKRYIIAPQGLKQGDVIESGANADIKPGNNLPLRNIPAGTVIHAVELRPGGGAKLARSAGVSIQLLGKEGTYAALRMPSGEIRRVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGKRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRKPNKPSDKLIVRRRRTGKKR |
| 50S ribosomal protein L34 | D | 47 | Epstein-Barr Virus Strain Ag876 | MAKGKRTFQPNNRRRARVHGFRLRMRTRAGRAIVANRRSKGRRALTA |
| 50S ribosomal protein L35 | E | 64 | Epstein-Barr Virus Strain Ag876 | MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINKLLNG |
| 50S ribosomal protein L36 | F | 37 | Epstein-Barr Virus Strain Ag876 | MKVNPSVKPICDKCRVIRRHGRVMVICSDPRHKQRQG |
| 50S Ribosomal Protein L31 | G | 75 | Epstein-Barr Virus Strain Ag876 | MKTGIHPEYVDTTVQCGCGHSFTTRSTKQSGTIVVEVCSQCHPFYTGKQKILDSGGRVARFEKRYGKRNKAAADK |
| 30S ribosomal protein S3 | I | 275 | Epstein-Barr Virus Strain Ag876 | MGQKINPHGFRLGITTEWKSRWYADKQYKDYVKEDVAIRKLLATGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPASDRPRRERPSGTRPRRSGSAGTTATSTEAGRAATSDAPAAGTAAAAEAPAESTES |
| 30S ribosomal protein S4 | J | 201 | Epstein-Barr Virus Strain Ag876 | MARYTGPATRKSRRLGVDLVGGDQSFEKRPYPPGQHGRARIKESEYRQQLQEKQKARFSYGVMEKQFRRYYEEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGHFLVNGVKVDIPSYRVSQYDIIDVKEKSLNTLPFQIARETAGERPIPSWLQVVGERQRILVHQLPERAQIDVPLTEQLIVELYSK |
| 30S Ribosomal Protein S5 | K | 214 | Epstein-Barr Virus Strain Ag876 | MAEQAGAGSAQDNRGGRGRRDDRGGRGRDGGDKSNYIERVVSINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIAKGVEEARKNFFRVPLIGSTITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRESEALAAAAAREGSA |
| 30S ribosomal protein S6 | L | 96 | Epstein-Barr Virus Strain Ag876 | MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIYAVIDVKAEPATVSELDRQLNLNESVLRTKVLRTDKH |
| 30S ribosomal protein S7 | M | 156 | Epstein-Barr Virus Strain Ag876 | MPRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLEGKKSLAERIVYGALEQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVNFSRQRREKTMVERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW |
| 30S Ribosomal Protein S8 | N | 132 | Epstein-Barr Virus Strain Ag876 | MTMTDPIADFLTRLRNANSAYHDEVTLPHSKLKANIAEILKREGYISDYRTEDARVGKSLVVQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW |
| 30S ribosomal protein S9 | O | 150 | Epstein-Barr Virus Strain Ag876 | MTDVTETEVVTESAEPREPVIIDRPIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR |
| 30S ribosomal protein S10 | P | 101 | Epstein-Barr Virus Strain Ag876 | MAGQKIRIRLKAYDHEAIDASARKIVETVTRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDALMRIDLPASVDVNIQ |
| 30S Ribosomal Protein S18 | R | 84 | Epstein-Barr Virus Strain Ag876 | MAKSNKRRPAPEKPVKTRKCVFCSKKGQTIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIAVAVKNAREVALLPFGSSTR |
| 30S ribosomal protein S13 | T | 124 | Epstein-Barr Virus Strain Ag876 | MARLVGVDLPRDKRMEIALTYIYGIGRTRSNEILAATGIDKNMRTKDLTDDQVTVLRDYIEGNLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKKAR |
| 30S Ribosomal Protein S14 | U | 61 | Epstein-Barr Virus Strain Ag876 | MAKKALVHKANKKPKFAVRAYTRCNKCGRPHSVYRKFGLCRICLREMAHAGELPGVQKSSW |
| 50S ribosomal protein L30 | 2 | 61 | Epstein-Barr Virus Strain Ag876 | MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVGK |
| Conserved domain protein | 1 | 33 | Epstein-Barr Virus Strain Ag876 | MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK |
| GTPase HflX | 4 | 470 | Epstein-Barr Virus Strain Ag876 | MTYPENSVAPSTGELALEDRASLRRVAGLSTELADVSEVEYRQLRLERVVLVGVWTEGSAADAEASLAELAALAETAGSEVLEGLIQRRDKPDPSTYIGSGKAAELREVVLATGADTVICDGELSPAQLNALEKAVKVKVIDRTALILDIFAQHATSREGKAQVSLAQMEYMLPRLRGWGESMSRQAGGRAGGAGGGVGTRGPGETKIETDRRRIRERMAKLRREIRDMKKIRDTQRGSRRRSEIPSVAIVGYTNAGKSSLLNALTGAGVLVENALFATLEPTTRRGEFEDGRPFVLTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLIHVVDGSDVNPLAQINAVRTVINEVVAEYDIAPPPELLVVNKIDAATGVGLAQLRRALPDAVFVSARTGDGLDKLRSRMGELVESTDATVDVTIPYDRGDLVARVHTDGHVDATEHTDAGTRIKARVPAPLAATLREYATFA |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S ribosomal RNA | a | 1528 | NA | UUUUUGUUUGGAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCUUAACACAUGCAAGUCGAACGGAAAGGCCCUUUCGGGGGUACUCGAGUGGCGAACGGGUGAGUAACACGUGGGUGAUCUGCCCUGCACUUUGGGAUAAGCCUGGGAAACUGGGUCUAAUACCGAAUACACCCUGCUGGUCGCAUGGCCUGGUAGGGGAAAGCUUUUGCGGUGUGGGAUGGGCCCGCGGCCUAUCAGCUUGUUGGUGGGGUGAUGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGAUACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCGACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUCUUUCAGCACAGACGAAGCGCAAGUGACGGUAUGUGCAGAAGAAGGACCGGCCAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUCCGAGCGUUGUCCGGAAUUACUGGGCGUAAAGAGCUCGUAGGUGGUUUGUCGCGUUGUUCGUGAAAACUCACAGCUUAACUGUGGGCGUGCGGGCGAUACGGGCAGACUAGAGUACUGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGGAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCAGUAACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGGUGGGUACUAGGUGUGGGUUUCCUUCCUUGGGAUCCGUGCCGUAGCUAACGCAUUAAGUACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGUUUGACAUGCACAGGACGCCGGCAGAGAUGUCGGUUCCCUUGUGGCCUGUGUGCAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUCUCAUGUUGCCAGCACGUUAUGGUGGGGACUCGUGAGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCGAUGCCGUGAGGUGGAGCGAAUCCUUUCAAAGCCGGUCUCAGUUCGGAUCGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCAUGAAAGUCGGUAACACCCGAAGCCGGUGGCCUAACCCUUGUGGAGGGAGCCGUCGAAGGUGGGAUCGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAUCACCUCCUUUCU |
| E-tRNA | 5 | 77 | NA | CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-01-05 Deposition Author(s): Agrawal, R.K. , Banavali, N.K. , Koripella, R.K. , Majumdar, S. , Manjari, S.R. , Sharma, M.R.