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FASTA Sequence PDB Format mmCIF Format
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8VFB

Ternary dna polymerase beta bound to dna containing primer terminal da base-paired with fapydg

PDB DOI: 10.2210/pdb8vfb/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-12-21
Deposition Author(s): Freudenthal, B.D. , Oden, P.N. , Ryan, B.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.64 Å

8vfb
Literature

Ternary dna polymerase beta bound to dna containing primer terminal da base-paired with fapydg

Freudenthal, B.D. , Oden, P.N. , Ryan, B.J.

Primary Citation of Related Structures: 8VFB


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*CP*GP*AP*CP*CP*(FAP)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') t 16 NA CCGACCXCGCATCAGC
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3') p 10 NA GCTGATGCGA
DNA (5'-D(P*GP*TP*CP*GP*G)-3') d 5 NA GTCGG

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase beta A 335 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-12-21
Deposition Author(s): Freudenthal, B.D. , Oden, P.N. , Ryan, B.J.