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FASTA Sequence PDB Format mmCIF Format
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8V1R

Herpes simplex virus 1 polymerase holoenzyme bound to dna and dttp in closed conformation

PDB DOI: 10.2210/pdb8v1r/pdb

Classification: TRANSFERASE/DNA
Organism(s): Human Alphaherpesvirus 1 Strain Kos , Synthetic Construct

Deposited: 2023-11-21
Deposition Author(s): Abraham, J. , Coen, D.M. , Hogle, J. , Pan, J. , Shankar, S. , Yang, P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

8v1r
Literature

Herpes simplex virus 1 polymerase holoenzyme bound to dna and dttp in closed conformation

Abraham, J. , Coen, D.M. , Hogle, J. , Pan, J. , Shankar, S. , Yang, P.

Primary Citation of Related Structures: 8V1R


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase A 1199 Human Alphaherpesvirus 1 Strain Kos , Synthetic Construct HHHHHHNFYNPYLAPVGTQQKPTGPTQRHTYYSECDEFRFIAPRVLDEDAPPEKRAGVHDGHLKRAPKVYCGGDERDVLRVGSGGFWPRRSRLWGGVDHAPAGFNPTVTVFHVYDILENVEHAYGMRAAQFHARFMDAITPTGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCERMAAALRESPGASFRGISADHFEAEVVERTDVYYYETRPALFYRVYVRSGRVLSYLCDNFCPAIKKYEGGVDATTRFILDNPGFVTFGWYRLKPGRNNTLAQPRAPMAFGTSSDVEFNCTADNLAIEGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQGARVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTAMGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIYGGKMLIKGVDLVRKNNCAFINRTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRITDPERDIQDFVLTAELSRHPRAYTNKRLAHLTVYYKLMARRAQVPSIKDRIPYVIVAQTREVEETVARLAALRELDAAAPGDEPAPPAALPSPAKRPRETPSHADPPGGASKPRKLLVSELAEDPAYAIAHGVALNTDYYFSHLLGAACVTFKALFGNNAKITESLLKRFIPEVWHPPDDVAARLRAAGFGAVGAGATAEETRRMLHRAFDTLA
DNA polymerase processivity factor B 340 Human Alphaherpesvirus 1 Strain Kos , Synthetic Construct MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVAGGTLKFFLTTPVPSLCVTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
PRIMER DNA (32-MER) p 32 NA GATTACGAATTCGAGCTCGGTACCCGGGGATC
TEMPLATE DNA (50-MER) t 50 NA CACACACACACACACACAGATCCCCGGGTACCGAGCTCGAATTCGTAATC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-11-21
Deposition Author(s): Abraham, J. , Coen, D.M. , Hogle, J. , Pan, J. , Shankar, S. , Yang, P.