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FASTA Sequence PDB Format mmCIF Format
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8UTA

Yjdf riboswitch from r. gauvreauii in complex with proflavine bound to fab bl3-6 s97n

PDB DOI: 10.2210/pdb8uta/pdb

Classification: RNA
Organism(s): Mus Musculus , Synthetic Construct

Deposited: 2023-10-30
Deposition Author(s): Krochmal, D. , Lewicka, A. , Piccirilli, J.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.05 Å

8uta
Literature

Yjdf riboswitch from r. gauvreauii in complex with proflavine bound to fab bl3-6 s97n

Krochmal, D. , Lewicka, A. , Piccirilli, J.A.

Primary Citation of Related Structures: 8UTA


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
yjdF RNA (R. gauvreauii) n 128 NA GGACAAAGAUAAAAACACAACGUAUGGCGAAACACGUCAUACAGAUCCGGUAGGUAGUCCGGACAUAAACAGCGGUAUAAAGCGCUGUUUAUAAGUAACCUUCCUCCUUAGGUCGUCCAUUCUUUGUC
yjdF RNA (R. gauvreauii) r 128 NA GGACAAAGAUAAAAACACAACGUAUGGCGAAACACGUCAUACAGAUCCGGUAGGUAGUCCGGACAUAAACAGCGGUAUAAAGCGCUGUUUAUAAGUAACCUUCCUCCUUAGGUCGUCCAUUCUUUGUC

Proteins
Molecule Chains Sequence Length Organism Sequence
Fab BL3-6 S97N heavy chain A 233 Mus Musculus , Synthetic Construct EISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
Fab BL3-6 S97N heavy chain H 233 Mus Musculus , Synthetic Construct EISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
Fab BL3-6 S97N light chain B 215 Mus Musculus , Synthetic Construct SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Fab BL3-6 S97N light chain L 215 Mus Musculus , Synthetic Construct SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-10-30
Deposition Author(s): Krochmal, D. , Lewicka, A. , Piccirilli, J.A.