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8UBI

Cryo-em structure of nrcam nucleosome aided by scfv (class_a)

PDB DOI: 10.2210/pdb8ubi/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Homo Sapiens , Mus Musculus , Synthetic Construct

Deposited: 2023-09-23
Deposition Author(s): Bai, Y. , Zhou, B.R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

8ubi
Literature

Cryo-em structure of nrcam nucleosome aided by scfv (class_a)

Bai, Y. , Zhou, B.R.

Primary Citation of Related Structures: 8UBI


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 97 Homo Sapiens , Mus Musculus , Synthetic Construct KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE
Histone H3 E 97 Homo Sapiens , Mus Musculus , Synthetic Construct KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE
Histone H4 B 83 Homo Sapiens , Mus Musculus , Synthetic Construct KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 83 Homo Sapiens , Mus Musculus , Synthetic Construct KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 109 Homo Sapiens , Mus Musculus , Synthetic Construct ARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK
Histone H2A G 109 Homo Sapiens , Mus Musculus , Synthetic Construct ARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK
Histone H2B type 1-J D 95 Homo Sapiens , Mus Musculus , Synthetic Construct KRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Histone H2B type 1-J H 95 Homo Sapiens , Mus Musculus , Synthetic Construct KRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
scFv M 270 Homo Sapiens , Mus Musculus , Synthetic Construct MKSSHHHHHHENLYFQSNAMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRAGGGGSGGGGSGGGGSGGGGSMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSS
scFv N 270 Homo Sapiens , Mus Musculus , Synthetic Construct MKSSHHHHHHENLYFQSNAMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRAGGGGSGGGGSGGGGSGGGGSMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
NRCAM DNA (162-MER) i 162 NA GATCCATTACTTCTGAAACAGATGACTCCCAGCAGCTGCTGCCTGTGGCCCACAGGGCTTCCTGCCCTGCATGACAGCTGCACATCACATCCTGTGGTCATACTACTTCAGCCGCTTCTACGGCCAGATACAAAAGTGGGTGGGGAACATAGGCAAGGGATC
NRCAM DNA (162-MER) j 162 NA GATCCCTTGCCTATGTTCCCCACCCACTTTTGTATCTGGCCGTAGAAGCGGCTGAAGTAGTATGACCACAGGATGTGATGTGCAGCTGTCATGCAGGGCAGGAAGCCCTGTGGGCCACAGGCAGCAGCTGCTGGGAGTCATCTGTTTCAGAAGTAATGGATC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-09-23
Deposition Author(s): Bai, Y. , Zhou, B.R.