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FASTA Sequence PDB Format mmCIF Format
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8TRR

T cell recognition of citrullinated vimentin peptide presented by hla-dr4

PDB DOI: 10.2210/pdb8trr/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Mus Musculus , Synthetic Construct

Deposited: 2023-08-10
Deposition Author(s): Lim, J.J. , Loh, T.J. , Reid, H.H. , Rossjohn, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å

Literature

T cell recognition of citrullinated vimentin peptide presented by hla-dr4

Lim, J.J. , Loh, T.J. , Reid, H.H. , Rossjohn, J.

Primary Citation of Related Structures: 8TRR


Proteins
Molecule Chains Sequence Length Organism Sequence
HLA class II histocompatibility antigen, DR alpha chain A 181 Homo Sapiens , Mus Musculus , Synthetic Construct IKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD
HLA class II histocompatibility antigen, DR alpha chain F 181 Homo Sapiens , Mus Musculus , Synthetic Construct IKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD
HLA class II histocompatibility antigen, DRB1 beta chain B 190 Homo Sapiens , Mus Musculus , Synthetic Construct GDTRPRFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWRA
HLA class II histocompatibility antigen, DRB1 beta chain G 190 Homo Sapiens , Mus Musculus , Synthetic Construct GDTRPRFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWRA
Vimentin C 13 Homo Sapiens , Mus Musculus , Synthetic Construct GVYATRSSAVRLR
Vimentin H 13 Homo Sapiens , Mus Musculus , Synthetic Construct GVYATRSSAVRLR
A03 TCR alpha chain D 209 Homo Sapiens , Mus Musculus , Synthetic Construct MGDSVTQTEGQVTVSESKSLIINCTYSTTSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALGDTGNYKYVFGAGTRLKVIAHIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS
A03 TCR alpha chain I 209 Homo Sapiens , Mus Musculus , Synthetic Construct MGDSVTQTEGQVTVSESKSLIINCTYSTTSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALGDTGNYKYVFGAGTRLKVIAHIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS
A03 TCR beta chain E 243 Homo Sapiens , Mus Musculus , Synthetic Construct EAAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLILELASLSQTAVYFCASSAVNSGNTLYFGEGSRLIVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD
A03 TCR beta chain J 243 Homo Sapiens , Mus Musculus , Synthetic Construct EAAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLILELASLSQTAVYFCASSAVNSGNTLYFGEGSRLIVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-08-10
Deposition Author(s): Lim, J.J. , Loh, T.J. , Reid, H.H. , Rossjohn, J.