8SSQ
Znfs 3-11 of ccctc-binding factor (ctcf) complexed with 35mer dna 35-4
PDB DOI: 10.2210/pdb8ssq/pdb
Classification: TRANSCRIPTION/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2023-05-08 Deposition Author(s): Cheng, X. , Horton, J.R. , Yang, J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.12 Å
Znfs 3-11 of ccctc-binding factor (ctcf) complexed with 35mer dna 35-4
Cheng, X. , Horton, J.R. , Yang, J.
Primary Citation of Related Structures: 8SSQ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Transcriptional repressor CTCF | A | 288 | Homo Sapiens , Synthetic Construct | TRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKRKMRSKK |
| Transcriptional repressor CTCF | D | 288 | Homo Sapiens , Synthetic Construct | TRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKRKMRSKK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (35-MER) Strand I | b | 35 | NA | TTAGCGCCCCCTGCTGGTTAAATGTGGTACTGCAC |
| DNA (35-MER) Strand I | e | 35 | NA | TTAGCGCCCCCTGCTGGTTAAATGTGGTACTGCAC |
| DNA (35-MER) Strand 2 | c | 35 | NA | GTGCAGTACCACATTTAACCAGCAGGGGGCGCTAA |
| DNA (35-MER) Strand 2 | f | 35 | NA | GTGCAGTACCACATTTAACCAGCAGGGGGCGCTAA |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2023-05-08 Deposition Author(s): Cheng, X. , Horton, J.R. , Yang, J.