PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8SK7

Cryo-em structure of designed influenza ha binder, ha_20, bound to influenza ha (strain: iowa43)

PDB DOI: 10.2210/pdb8sk7/pdb

Classification: DE NOVO PROTEIN/Viral Protein
Organism(s): Influenza A Virus , Synthetic Construct

Deposited: 2023-04-18
Deposition Author(s): Bennett, N.R. , Borst, A.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.93 Å

8sk7
Literature

Cryo-em structure of designed influenza ha binder, ha_20, bound to influenza ha (strain: iowa43)

Bennett, N.R. , Borst, A.J.

Primary Citation of Related Structures: 8SK7


Proteins
Molecule Chains Sequence Length Organism Sequence
Hemagglutinin HA1 chain A 321 Influenza A Virus , Synthetic Construct DTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLGKCNIAGWILGNPECESLLSERSWSYIVETPNSENGTCFPGDFIDYEELREQLSSVSSFERFEIFSKESSWPKHTTGGVTAACSHAGKSSFYRNLLWLTEKDGSYPNLNNSYVNKKGKEVLVLWGVHHPSNIKDQQTLYQKENAYVSVVSSNYNRRFTPEIAERPKVRGQAGRINYYWTLLKPGDTIMFEANGNLIAPWYAFALSRGFGSGIITSNASMHECDTKCQTPQGAINSSLPFQNIHPITIGECPKYVRSTKLRMVTGLRNIP
Hemagglutinin HA1 chain B 321 Influenza A Virus , Synthetic Construct DTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLGKCNIAGWILGNPECESLLSERSWSYIVETPNSENGTCFPGDFIDYEELREQLSSVSSFERFEIFSKESSWPKHTTGGVTAACSHAGKSSFYRNLLWLTEKDGSYPNLNNSYVNKKGKEVLVLWGVHHPSNIKDQQTLYQKENAYVSVVSSNYNRRFTPEIAERPKVRGQAGRINYYWTLLKPGDTIMFEANGNLIAPWYAFALSRGFGSGIITSNASMHECDTKCQTPQGAINSSLPFQNIHPITIGECPKYVRSTKLRMVTGLRNIP
Hemagglutinin HA1 chain C 321 Influenza A Virus , Synthetic Construct DTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLGKCNIAGWILGNPECESLLSERSWSYIVETPNSENGTCFPGDFIDYEELREQLSSVSSFERFEIFSKESSWPKHTTGGVTAACSHAGKSSFYRNLLWLTEKDGSYPNLNNSYVNKKGKEVLVLWGVHHPSNIKDQQTLYQKENAYVSVVSSNYNRRFTPEIAERPKVRGQAGRINYYWTLLKPGDTIMFEANGNLIAPWYAFALSRGFGSGIITSNASMHECDTKCQTPQGAINSSLPFQNIHPITIGECPKYVRSTKLRMVTGLRNIP
Hemagglutinin G 232 Influenza A Virus , Synthetic Construct SIQSRGLFGAIAGFIEGGWTGMIDGWYGYHWQNEQGSGYAADQKSTQNAINGITNIVNSVIEKMNTQFTAVGKEFNNLEKRMENLNKKVDDGFLDIWTYNAELLVLLINERTLDFHDSNVKNLYEKVKNQLRNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYPKYSEESKLNREKIDGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGSGLNDIFEAQKIEWHEGHHHHHH
Hemagglutinin H 232 Influenza A Virus , Synthetic Construct SIQSRGLFGAIAGFIEGGWTGMIDGWYGYHWQNEQGSGYAADQKSTQNAINGITNIVNSVIEKMNTQFTAVGKEFNNLEKRMENLNKKVDDGFLDIWTYNAELLVLLINERTLDFHDSNVKNLYEKVKNQLRNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYPKYSEESKLNREKIDGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGSGLNDIFEAQKIEWHEGHHHHHH
Hemagglutinin I 232 Influenza A Virus , Synthetic Construct SIQSRGLFGAIAGFIEGGWTGMIDGWYGYHWQNEQGSGYAADQKSTQNAINGITNIVNSVIEKMNTQFTAVGKEFNNLEKRMENLNKKVDDGFLDIWTYNAELLVLLINERTLDFHDSNVKNLYEKVKNQLRNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYPKYSEESKLNREKIDGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGSGLNDIFEAQKIEWHEGHHHHHH
HA_20 minibinder (RFdiffusion-designed) X 65 Influenza A Virus , Synthetic Construct MEKEKELKEYAEKIKKEIGDIESVEVKDGKILVKAKKITDKTVDAIMKLTVKAARLGFKVEVELV
HA_20 minibinder (RFdiffusion-designed) Y 65 Influenza A Virus , Synthetic Construct MEKEKELKEYAEKIKKEIGDIESVEVKDGKILVKAKKITDKTVDAIMKLTVKAARLGFKVEVELV
HA_20 minibinder (RFdiffusion-designed) Z 65 Influenza A Virus , Synthetic Construct MEKEKELKEYAEKIKKEIGDIESVEVKDGKILVKAKKITDKTVDAIMKLTVKAARLGFKVEVELV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-04-18
Deposition Author(s): Bennett, N.R. , Borst, A.J.