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FASTA Sequence PDB Format mmCIF Format
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8SIT

Crystal structure of sars-cov-2 spike receptor-binding domain in complex with broadly neutralizing antibody cc84.24 fab

PDB DOI: 10.2210/pdb8sit/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2023-04-16
Deposition Author(s): Liu, H. , Wilson, I.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.91 Å

8sit
Literature

Crystal structure of sars-cov-2 spike receptor-binding domain in complex with broadly neutralizing antibody cc84.24 fab

Liu, H. , Wilson, I.A.

Primary Citation of Related Structures: 8SIT


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 205 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSGHHHHHH
Spike protein S1 B 205 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSGHHHHHH
Spike protein S1 C 205 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSGHHHHHH
Spike protein S1 D 205 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSGHHHHHH
CC84.24 fab heavy chain H 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVKPGGSLRLSCAASGFTFSPYSMNWVRQAPGKGLEWVSSIRSSGNYISYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARAGRDYYDRSGYQRFPGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
CC84.24 fab heavy chain M 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVKPGGSLRLSCAASGFTFSPYSMNWVRQAPGKGLEWVSSIRSSGNYISYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARAGRDYYDRSGYQRFPGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
CC84.24 fab heavy chain O 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVKPGGSLRLSCAASGFTFSPYSMNWVRQAPGKGLEWVSSIRSSGNYISYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARAGRDYYDRSGYQRFPGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
CC84.24 fab heavy chain Q 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVKPGGSLRLSCAASGFTFSPYSMNWVRQAPGKGLEWVSSIRSSGNYISYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARAGRDYYDRSGYQRFPGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
CC84.24 fab light chain L 214 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QSALTQPPSVSVAPGQTARITCGGNNIGSKGVQWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
CC84.24 fab light chain N 214 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QSALTQPPSVSVAPGQTARITCGGNNIGSKGVQWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
CC84.24 fab light chain P 214 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QSALTQPPSVSVAPGQTARITCGGNNIGSKGVQWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
CC84.24 fab light chain S 214 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QSALTQPPSVSVAPGQTARITCGGNNIGSKGVQWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-04-16
Deposition Author(s): Liu, H. , Wilson, I.A.