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8Q9R

Crystal structure of mads-box/mef2d n-terminal domain bound to dsdna and hdac9 deacetylase binding motif

PDB DOI: 10.2210/pdb8q9r/pdb

Classification: TRANSCRIPTION
Organism(s): Dna Molecule , Homo Sapiens

Deposited: 2023-08-20
Deposition Author(s): Angelini, A. , Brancolini, C. , Carli, A. , Cendron, L. , Chinellato, M. , Di Giorgio, E. , Mazzoccato, Y. , Perin, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.25 Å

8q9r
Literature

Crystal structure of mads-box/mef2d n-terminal domain bound to dsdna and hdac9 deacetylase binding motif

Angelini, A. , Brancolini, C. , Carli, A. , Cendron, L. , Chinellato, M. , Di Giorgio, E. , Mazzoccato, Y. , Perin, S.

Primary Citation of Related Structures: 8Q9R


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone deacetylase 9 (HDAC9) binding motif peptide: EVKQKLQEFLLSKS X 18 Dna Molecule , Homo Sapiens WGSGEVKQKLQEFLLSKS
Histone deacetylase 9 (HDAC9) binding motif peptide: EVKQKLQEFLLSKS C 18 Dna Molecule , Homo Sapiens WGSGEVKQKLQEFLLSKS
MEF2D protein A 95 Dna Molecule , Homo Sapiens MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNG
MEF2D protein B 95 Dna Molecule , Homo Sapiens MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNG
MEF2D protein E 95 Dna Molecule , Homo Sapiens MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNG
MEF2D protein F 95 Dna Molecule , Homo Sapiens MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
MADS box dsDNA: AACTATTTATAAGA k 14 NA AACTATTTATAAGA
MADS box dsDNA: AACTATTTATAAGA g 14 NA AACTATTTATAAGA
MADS box dsDNA: TCTTATAAATAGT l 14 NA TCTTATAAATAGTT
MADS box dsDNA: TCTTATAAATAGT h 14 NA TCTTATAAATAGTT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-08-20
Deposition Author(s): Angelini, A. , Brancolini, C. , Carli, A. , Cendron, L. , Chinellato, M. , Di Giorgio, E. , Mazzoccato, Y. , Perin, S.