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8PDE

Crystal structure of the mads-box/mef2 domain of mef2d bound to dsdna and hdac4 deacetylase binding motif

PDB DOI: 10.2210/pdb8pde/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2023-06-12
Deposition Author(s): Angelini, A. , Biondi, B. , Brancolini, C. , Carli, A. , Cendron, L. , Chinellato, M. , Di Giorgio, E. , Mazzocato, Y. , Perin, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.4 Å

8pde
Literature

Crystal structure of the mads-box/mef2 domain of mef2d bound to dsdna and hdac4 deacetylase binding motif

Angelini, A. , Biondi, B. , Brancolini, C. , Carli, A. , Cendron, L. , Chinellato, M. , Di Giorgio, E. , Mazzocato, Y. , Perin, S.

Primary Citation of Related Structures: 8PDE


Proteins
Molecule Chains Sequence Length Organism Sequence
MEF2D protein A 95 Homo Sapiens , Synthetic Construct MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNG
MEF2D protein B 95 Homo Sapiens , Synthetic Construct MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNG
MEF2D protein D 95 Homo Sapiens , Synthetic Construct MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNG
MEF2D protein E 95 Homo Sapiens , Synthetic Construct MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNG
HDAC4 (histone deacetylase 4) binding motif peptide:GSGEVKMKLQEFVLNKK C 17 Homo Sapiens , Synthetic Construct GSGEVKMKLQEFVLNKK
HDAC4 (histone deacetylase 4) binding motif peptide:GSGEVKMKLQEFVLNKK X 17 Homo Sapiens , Synthetic Construct GSGEVKMKLQEFVLNKK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3') f 14 NA AACTATTTATAAGA
DNA (5'-D(P*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3') k 14 NA AACTATTTATAAGA
DNA (5'-D(P*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*TP*T)-3') g 14 NA TCTTATAAATAGTT
DNA (5'-D(P*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*TP*T)-3') l 14 NA TCTTATAAATAGTT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-06-12
Deposition Author(s): Angelini, A. , Biondi, B. , Brancolini, C. , Carli, A. , Cendron, L. , Chinellato, M. , Di Giorgio, E. , Mazzocato, Y. , Perin, S.