Cryoem structure of sparta complex pre-nad cleavage
PDB DOI: 10.2210/pdb8ozi/pdb
Classification: IMMUNE SYSTEM Organism(s): Maribacter Polysiphoniae , Synthetic Construct
Deposited: 2023-05-09 Deposition Author(s): Babatunde, E. , Dong, C.N. , Henning, S. , Xu, H.L.
Cryoem structure of sparta complex pre-nad cleavage
Babatunde, E. , Dong, C.N. , Henning, S. , Xu, H.L.
Primary Citation of Related Structures: 8OZI
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
TIR domain-containing protein | A | 452 | Maribacter Polysiphoniae , Synthetic Construct | MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE |
TIR domain-containing protein | C | 452 | Maribacter Polysiphoniae , Synthetic Construct | MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE |
TIR domain-containing protein | E | 452 | Maribacter Polysiphoniae , Synthetic Construct | MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE |
TIR domain-containing protein | G | 452 | Maribacter Polysiphoniae , Synthetic Construct | MRNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEKVIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDEQLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSNLLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEYNWMLPKRFDVRELTFPAVRYKNYLCTFAWAYDFTYHLPKTETYHKSKTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELRMKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGASKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTKLLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPEKNTLEEEAELSGFNQGEDIEELEELIENLEAE |
Piwi domain-containing protein | B | 507 | Maribacter Polysiphoniae , Synthetic Construct | MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI |
Piwi domain-containing protein | D | 507 | Maribacter Polysiphoniae , Synthetic Construct | MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI |
Piwi domain-containing protein | F | 507 | Maribacter Polysiphoniae , Synthetic Construct | MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI |
Piwi domain-containing protein | H | 507 | Maribacter Polysiphoniae , Synthetic Construct | MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGLKIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNEDIGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKYCRPNSVLPKEMVQTKALMSKSKAKSFRYEPSLFPDINIELKEQEKEAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGEILTASTDIKTPPLAFKYYI |
Nucleic Acids / Hybrid | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | i | 18 | NA | UUUUUUUUUUUUUUUUUU |
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | k | 18 | NA | UUUUUUUUUUUUUUUUUU |
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | m | 18 | NA | UUUUUUUUUUUUUUUUUU |
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | n | 18 | NA | UUUUUUUUUUUUUUUUUU |
DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | j | 16 | NA | AAAAAAAAAAAAAAAA |
DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | l | 16 | NA | AAAAAAAAAAAAAAAA |
DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | o | 16 | NA | AAAAAAAAAAAAAAAA |
DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | p | 16 | NA | AAAAAAAAAAAAAAAA |
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-05-09 Deposition Author(s): Babatunde, E. , Dong, C.N. , Henning, S. , Xu, H.L.