8OTS
Oct4 and myc-max co-bound to a nucleosome
PDB DOI: 10.2210/pdb8ots/pdb
Classification: TRANSCRIPTION Organism(s): Aequorea Victoria , Homo Sapiens , Synthetic Construct
Deposited: 2023-04-21 Deposition Author(s): Cavadini, S. , Kempf, G. , Michael, A.K. , Stoos, L. , Thoma, N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.3 Å
Oct4 and myc-max co-bound to a nucleosome
Cavadini, S. , Kempf, G. , Michael, A.K. , Stoos, L. , Thoma, N.
Primary Citation of Related Structures: 8OTS
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3.1 | A | 139 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3.1 | E | 139 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | B | 106 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 106 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A type 1-B/E | C | 133 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2A type 1-B/E | G | 133 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK |
| Histone H2B type 1-J | D | 128 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA |
| Histone H2B type 1-J | H | 128 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA |
| Green fluorescent protein,POU domain, class 5, transcription factor 1 | K | 544 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | MDWSHPQFEKSAVDENLYFQGGMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYKEAAAKEAAAKMAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFCGGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNSDGASPEPCTVTPGAVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDV |
| Myc proto-oncogene protein | M | 94 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | MHHHHHHEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLRNS |
| Protein max | N | 82 | Aequorea Victoria , Homo Sapiens , Synthetic Construct | MADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (127-MER) | i | 127 | NA | CTTTGTTATGCAAATCGGGGTGGGGCGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGAT |
| DNA (127-MER) | j | 127 | NA | ATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACGCCCCACCCCGATTTGCATAACAAAG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-04-21 Deposition Author(s): Cavadini, S. , Kempf, G. , Michael, A.K. , Stoos, L. , Thoma, N.