8OPE
Virus-like particle based on pvy coat protein with dc40 deletion with helical architecture encapsidating ssrna
PDB DOI: 10.2210/pdb8ope/pdb
Classification: VIRUS LIKE PARTICLE Organism(s): Potato Virus Y Strain Ntn
Deposited: 2023-04-07 Deposition Author(s): Kavcic, L. , Kezar, A. , Podobnik, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.09 Å
Virus-like particle based on pvy coat protein with dc40 deletion with helical architecture encapsidating ssrna
Kavcic, L. , Kezar, A. , Podobnik, M.
Primary Citation of Related Structures: 8OPE
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Genome polyprotein (Fragment) | AA | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AC | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AE | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AG | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AI | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AK | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AM | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AO | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AQ | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AS | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AU | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AW | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | AY | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | BA | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | BC | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | BE | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | BG | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | BI | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | BK | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | BM | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Genome polyprotein (Fragment) | BO | 227 | Potato Virus Y Strain Ntn | GNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKS |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ab | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ad | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | af | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ah | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | aj | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | al | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | an | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ap | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ar | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | at | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | av | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | ax | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | az | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bb | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bd | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bf | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bh | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bj | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bl | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bn | 5 | NA | UUUUU |
| RNA (5'-R(P*UP*UP*UP*UP*U)-3') | bp | 5 | NA | UUUUU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-04-07 Deposition Author(s): Kavcic, L. , Kezar, A. , Podobnik, M.