PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8OK9

Heterodimeric complex of archaeoglobus fulgidus argonaute protein af1318 (afago) with dna and afago-n protein containing n-l1-l2 domains

PDB DOI: 10.2210/pdb8ok9/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct

Deposited: 2023-03-27
Deposition Author(s): Manakova, E.N. , Zaremba, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

Literature

Heterodimeric complex of archaeoglobus fulgidus argonaute protein af1318 (afago) with dna and afago-n protein containing n-l1-l2 domains

Manakova, E.N. , Zaremba, M.

Primary Citation of Related Structures: 8OK9


Proteins
Molecule Chains Sequence Length Organism Sequence
Piwi protein AF_1318 A 441 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MGSSHHHHHHSQDPMMEYKIVENGLTYRIGNGASVPISNTGELIKGLRNYGPYEVPSLKYNQIALIHNNQFSSLINQLKSQISSKIDEVWHIHNINISEFIYDSPHFDSIKSQVDNAIDTGVDGIMLVLPEYNTPLYYKLKSYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVDPEKGSDIIIGTGATRIDNVNLFCFAMVFKKDGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGGYPINPEGNRSLQTNPWFL
Archaeoglobus fulgidus AfAgo-N protein C 264 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MGSSHHHHHHSQDPMEIPLSSGNVNTPDVRSSGILYINIYPIVNYPETIKVSAIPYYEEFLPGKWKKRIGDLIYLYGYGIENEFDEIDNSNALFGKIFRKYLLDILSENIATPWQLKELGSTLRLVKEITENYEFSNIIKLQYELIINVHHWQNTNFGIIVDLKINILDRENNQRISYTKIKDKYGESVKKKIWVSVQAFHRHLTPEGKKYATAMRDKFNLLTGLLKEAFGSSEDEKTFSTPDGEIKIVFKPLEIVEVSNNDGI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*AP*TP*CP*GP*AP*CP*CP*AP*GP*GP*CP*TP*AP*CP*G)-3') r 15 NA ATCGACCAGGCTACG
DNA (5'-D(P*AP*TP*CP*GP*AP*CP*CP*AP*GP*GP*CP*TP*AP*CP*G)-3') s 15 NA ATCGACCAGGCTACG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-03-27
Deposition Author(s): Manakova, E.N. , Zaremba, M.