8K4O
Cryo-em structure of kaposi's sarcoma-associated herpesvirus-g protein-coupled receptor (kshv-gpcr)in complex with cxc chemokine cxcl1
PDB DOI: 10.2210/pdb8k4o/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Human Gammaherpesvirus 8
Deposited: 2023-07-20 Deposition Author(s): Liu, A.J. , Liu, Y.Z.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.01 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| G protein-coupled receptor | E | 333 | Homo Sapiens , Human Gammaherpesvirus 8 | DFLTIFLDDDESWNETLNMSGYDYSGNFSLEVSVCEMTTVVPYTWNVGILSLIFLINVLGNGLVTYIFCKHRSRAGAIDILLLGICLNSLCLSISLLAEVLMFLFPNIISTGLCRLEIFFYYLYVYLDIFSVVCVSLVRYLLVAYSTRSWPKKQSLGWVLTSAALLIALVLSGDACRHRSRVVDPVSKQAMCYENAGNMTADWRLHVRTVSVTAGFLLPLALLILFYALTWCVVRRTKLQARRKVRGVIVAVVLLFFVFCFPYHVLNLLDTLLRRRWIRDSCYTRGLINVGLAVTSLLQALYSAVVPLIYSCLGSLFRQRMYGLFQSLRQSFM |
| Growth-regulated alpha protein | F | 63 | Homo Sapiens , Human Gammaherpesvirus 8 | ASVATELRCQCLQTLQGIHPKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKII |
| Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | B | 336 | Homo Sapiens , Human Gammaherpesvirus 8 | DQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN |
| Guanine nucleotide-binding protein G(I) subunit alpha-1 | C | 350 | Homo Sapiens , Human Gammaherpesvirus 8 | LSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGSAEEGFMTAELAGVIKRLWKDGGVQACFSRSREYQLNDSAAYYLNDLDRISQGSYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF |
| Guanine nucleotide-binding protein subunit gamma | G | 54 | Homo Sapiens , Human Gammaherpesvirus 8 | IAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFR |
Experimental Data
Method: ELECTRON MICROSCOPY