8K3Z
Cryo-em structure of cxcr4 in complex with cxcl12
PDB DOI: 10.2210/pdb8k3z/pdb
Classification: IMMUNE SYSTEM Organism(s): Homo Sapiens , Vicugna Pacos
Deposited: 2023-07-17 Deposition Author(s): Liao, Q.W. , Liu, A.J. , Liu, Y.Z. , Ye, R.D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.81 Å
Cryo-em structure of cxcr4 in complex with cxcl12
Liao, Q.W. , Liu, A.J. , Liu, Y.Z. , Ye, R.D.
Primary Citation of Related Structures: 8K3Z
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| C-X-C chemokine receptor type 4 | A | 296 | Homo Sapiens , Vicugna Pacos | KEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSV |
| Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | B | 338 | Homo Sapiens , Vicugna Pacos | ELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN |
| Guanine nucleotide-binding protein G(i) subunit alpha-1 | C | 354 | Homo Sapiens , Vicugna Pacos | MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF |
| Stromal cell-derived factor 1 | D | 62 | Homo Sapiens , Vicugna Pacos | KPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYL |
| Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | G | 55 | Homo Sapiens , Vicugna Pacos | IAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFRE |
| scFv16 | S | 247 | Homo Sapiens , Vicugna Pacos | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-07-17 Deposition Author(s): Liao, Q.W. , Liu, A.J. , Liu, Y.Z. , Ye, R.D.