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8JSI

Cryo-em structure of a dna-protein complex

PDB DOI: 10.2210/pdb8jsi/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Chaetopterus Variopedatus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-06-20
Deposition Author(s): Li, Z.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

8jsi
Literature

Cryo-em structure of a dna-protein complex

Li, Z.

Primary Citation of Related Structures: 8JSI


Proteins
Molecule Chains Sequence Length Organism Sequence
Argonaute family protein A 750 Chaetopterus Variopedatus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MLMKVLTNMVKLNQDIIPNEIYLYKIFNKPEDGMNIYKIAYRNHGIVIDPQNRIIATPSELEYSGKFAIEDEISFNELPENYQNRLVLRILRDNGISDHALSRTLQKYRKPKPFGDFEVIPEIRSSVIKHGGDFYLVLHLSHQIRSKKTLWELVGRNKDALRDFLKEHRGTILLRDIASEHKVVYKPIFKRYNGDPDLIEDNSNDVEHWYDYHLERYWNTPELKKEFYKKFGPVDLNQPIILAKPLRQHNRGDLVHLLPQFVVPVYNAEQLNDILASEILEYLKLTSNQRISLLSRLINDIKTNTNIIVSSLTELEANTFDVDLNDMLQVRNADNVKVTLSELEISKTRLFTWMKSRKYPVILPYDIPQKLKKIEKIPVFIIVDSALSRDIQTFAKDEFRYLISSLQKSLSNWVDFPILDIRDKYIFTIDLTSDKDIVNLSIKLVNLMKNAELGLALIATRTKLPNETFDEVKKRLFSVNIISQVVNEATLYKRDKYNESRLNLYVQHNLLFQILSKLGIKYYVLRHKFSYDYIVGIDVTPMKLSHGYIGGSAVMFDSQGYIRKIIPVEIGEQMGESIDMKEFFKDMVVQFGKFGIDLEGKSILILRDGKITKDEEEGLAYISKVFGIKITTFNIVKRHLLRIFANRKLYLRLANSVYLLPHRIKQSVGTPVPLKLSEKRLILDGTITSQEITYNDIFEILLLSELNYGSISADMKLPAPVHYAHKFVRALRKGWRIREELLAEGFLYFV
Argonaute family protein B 750 Chaetopterus Variopedatus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MLMKVLTNMVKLNQDIIPNEIYLYKIFNKPEDGMNIYKIAYRNHGIVIDPQNRIIATPSELEYSGKFAIEDEISFNELPENYQNRLVLRILRDNGISDHALSRTLQKYRKPKPFGDFEVIPEIRSSVIKHGGDFYLVLHLSHQIRSKKTLWELVGRNKDALRDFLKEHRGTILLRDIASEHKVVYKPIFKRYNGDPDLIEDNSNDVEHWYDYHLERYWNTPELKKEFYKKFGPVDLNQPIILAKPLRQHNRGDLVHLLPQFVVPVYNAEQLNDILASEILEYLKLTSNQRISLLSRLINDIKTNTNIIVSSLTELEANTFDVDLNDMLQVRNADNVKVTLSELEISKTRLFTWMKSRKYPVILPYDIPQKLKKIEKIPVFIIVDSALSRDIQTFAKDEFRYLISSLQKSLSNWVDFPILDIRDKYIFTIDLTSDKDIVNLSIKLVNLMKNAELGLALIATRTKLPNETFDEVKKRLFSVNIISQVVNEATLYKRDKYNESRLNLYVQHNLLFQILSKLGIKYYVLRHKFSYDYIVGIDVTPMKLSHGYIGGSAVMFDSQGYIRKIIPVEIGEQMGESIDMKEFFKDMVVQFGKFGIDLEGKSILILRDGKITKDEEEGLAYISKVFGIKITTFNIVKRHLLRIFANRKLYLRLANSVYLLPHRIKQSVGTPVPLKLSEKRLILDGTITSQEITYNDIFEILLLSELNYGSISADMKLPAPVHYAHKFVRALRKGWRIREELLAEGFLYFV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*C)-3') t 16 NA ACAACCTACTACCTCC
DNA (5'-D(P*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*C)-3') u 16 NA ACAACCTACTACCTCC
DNA (5'-D(P*GP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3') g 16 NA GGAGGTAGTAGGTTGT
DNA (5'-D(P*GP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3') h 16 NA GGAGGTAGTAGGTTGT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-06-20
Deposition Author(s): Li, Z.