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8JPX

Cryo-em structure of pfago-guide dna-target dna complex

PDB DOI: 10.2210/pdb8jpx/pdb

Classification: GENE REGULATION
Organism(s): Pyrococcus Furiosus (Strain Atcc 43587 / Dsm 3638 / Jcm 8422 / Vc1) , Synthetic Construct

Deposited: 2023-06-13
Deposition Author(s): Zhuang, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

8jpx
Literature

Cryo-em structure of pfago-guide dna-target dna complex

Zhuang, L.

Primary Citation of Related Structures: 8JPX


Proteins
Molecule Chains Sequence Length Organism Sequence
Protein argonaute B 770 Pyrococcus Furiosus (Strain Atcc 43587 / Dsm 3638 / Jcm 8422 / Vc1) , Synthetic Construct MKAIVVINLVKINKKIIPDKIYVYRLFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIATTKELEYEGEFIPEGEISFSELRNDYQSKLVLRLLKENGIGEYELSKLLRKFRKPKTFGDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQSMKTLWELVNKDPKELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQVDLKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYNAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIAQELENKIRVRDDKGNSVPISQLNVQKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRLFNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDYRFNYDYIIGIDVAPMKRSEGYIGGSAVMFDSQGYIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDGRITNNEEEGLKYISEMFDIEVVTMDVIKNHPVRAFANMKMYFNLGGAIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAIRNEWKIKEEFLAEGFLYFV
Protein argonaute A 770 Pyrococcus Furiosus (Strain Atcc 43587 / Dsm 3638 / Jcm 8422 / Vc1) , Synthetic Construct MKAIVVINLVKINKKIIPDKIYVYRLFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIATTKELEYEGEFIPEGEISFSELRNDYQSKLVLRLLKENGIGEYELSKLLRKFRKPKTFGDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQSMKTLWELVNKDPKELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQVDLKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYNAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIAQELENKIRVRDDKGNSVPISQLNVQKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRLFNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDYRFNYDYIIGIDVAPMKRSEGYIGGSAVMFDSQGYIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDGRITNNEEEGLKYISEMFDIEVVTMDVIKNHPVRAFANMKMYFNLGGAIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAIRNEWKIKEEFLAEGFLYFV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Guide DNA h 17 NA TGAGGTAGTAGGTTGTA
Guide DNA g 17 NA TGAGGTAGTAGGTTGTA
Target DNA u 17 NA ACAACCTACTACCTCAT
Target DNA t 17 NA ACAACCTACTACCTCAT
Excess DNA e 6 NA TTTTTT
Excess DNA f 6 NA TTTTTT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-06-13
Deposition Author(s): Zhuang, L.