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FASTA Sequence PDB Format mmCIF Format
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8JL9

Cryo-em structure of the human nucleosome with scfv

PDB DOI: 10.2210/pdb8jl9/pdb

Classification: GENE REGULATION/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2023-06-02
Deposition Author(s): Akatsu, M. , Hatazawa, S. , Kato, J. , Kobayashi, Y. , Kujirai, T. , Kurumizaka, H. , Ogasawara, M. , Oishi, T. , Takizawa, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.65 Å

8jl9
Literature

Cryo-em structure of the human nucleosome with scfv

Akatsu, M. , Hatazawa, S. , Kato, J. , Kobayashi, Y. , Kujirai, T. , Kurumizaka, H. , Ogasawara, M. , Oishi, T. , Takizawa, Y.

Primary Citation of Related Structures: 8JL9


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 139 Homo Sapiens , Synthetic Construct GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 139 Homo Sapiens , Synthetic Construct GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 106 Homo Sapiens , Synthetic Construct GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 106 Homo Sapiens , Synthetic Construct GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E C 133 Homo Sapiens , Synthetic Construct GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E G 133 Homo Sapiens , Synthetic Construct GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-J D 129 Homo Sapiens , Synthetic Construct GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-J H 129 Homo Sapiens , Synthetic Construct GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (193-MER) i 193 NA ATCACGTAATATTGGCCAGCTAGGATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATCCTAGCTGGCCAATATTACGTGAT
DNA (193-MER) j 193 NA ATCACGTAATATTGGCCAGCTAGGATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATCCTAGCTGGCCAATATTACGTGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-06-02
Deposition Author(s): Akatsu, M. , Hatazawa, S. , Kato, J. , Kobayashi, Y. , Kujirai, T. , Kurumizaka, H. , Ogasawara, M. , Oishi, T. , Takizawa, Y.