8J5K
Structural insights into photosystem ii supercomplex and trimeric fcp antennae of a centric diatom cyclotella meneghiniana
PDB DOI: 10.2210/pdb8j5k/pdb
Classification: PHOTOSYNTHESIS Organism(s): Stephanocyclus Meneghinianus
Deposited: 2023-04-23 Deposition Author(s): Li, Z.H. , Shen, J.R. , Shen, L.L. , Wang, W.D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.93 Å
Structural insights into photosystem ii supercomplex and trimeric fcp antennae of a centric diatom cyclotella meneghiniana
Li, Z.H. , Shen, J.R. , Shen, L.L. , Wang, W.D.
Primary Citation of Related Structures: 8J5K
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| PsbA | A | 333 | Stephanocyclus Meneghinianus | VSLWERFCAWITSTENRLYIGWFGCLMFPTLLTATSCFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAVVPSSNAIGMHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVSAYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWITAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGIEVMHERNAHNFPLDL |
| PsbK | K | 37 | Stephanocyclus Meneghinianus | KLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR |
| PsbL | L | 37 | Stephanocyclus Meneghinianus | TGPNPNKQAVELNRTSLYWGLLLIFVLAVLFSSYFFN |
| PsbM | M | 41 | Stephanocyclus Meneghinianus | EVQFGAYLAVLLGTFLPALFLVNLFIQTEARKAGKAGGQDS |
| Psb34 | N | 30 | Stephanocyclus Meneghinianus | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| PsbO | O | 248 | Stephanocyclus Meneghinianus | LTKSQINELSYLQVKGTGLANRCAEVVGEDSIKPKPGAKLVDMCIEPKAWAVEEEVGKAGKTEKKFVNSKVMTRQTYTLDAIEGPITVDGGKITFSEKEGIDYAATTVQLPGGERVPFLFTVKDLVAKGNGDTFKPGFQMGGDFNTPSYRTGLFLDPKGRGGTTGYDMAVALPALQLGEEGDAELFGENNKVFDITQGRIEMEVNKVNAEDSEIGGVFVATQLSDTDMGSKTPKKVLTKGIFYAKVEQ |
| PsbQ' | Q | 145 | Stephanocyclus Meneghinianus | SVFGLIGDGTSYSEGAAYGTDQADKLYSPYSVYSPEGEKSLYKPDSAEYLARKKAVLAETKNRLQKIPGYVDKKEWFNVKDELTRYMYETRGAVRSLSSSVTQKEKAEVFFRALEDTYGAATLKKGDAVKASNDKAIAALDAFTA |
| PsbT | T | 29 | Stephanocyclus Meneghinianus | MEALVYTFLLIGTLMVIFFAVFFRETPRI |
| PsbU | U | 92 | Stephanocyclus Meneghinianus | VIDYENIGYLGGSSIVDINNANIRAYLKMPGMYPTVAGKIVSHGPYSGVSDLYKIPGLSSAEADVIKKYESRLTAKTPSPDYVIDRINNGLY |
| PsbV | V | 136 | Stephanocyclus Meneghinianus | IDLDEATRTVVVDNAGNTTVLTPEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEALSLATPRRDNINALVDYIKNPTTYDGLESIAEVHPSIKSADIYPRMRSLTDEDLYSIAGHIMLSPKIASEKWGGGKIY |
| PsbW | W | 50 | Stephanocyclus Meneghinianus | ARFANGKPQSIEAKYIMRSPAEWDRFMRFMDRYAEANGLGFSSXXXXXXX |
| PsbB | B | 481 | Stephanocyclus Meneghinianus | ALPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMTRLGITDSWGGWSITGESVSNPGIWSFEGVALSHIILSGMCFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGITGKVQPVAPAWGADGFNPFNPGGIAAHHIAAGIFGIFAGIFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFAAFVTSGTMWYGAAATPIELFGPTRYQWDSGYFQQEIERQVETSVSEGLSESQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFRDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFRSSPRGWYTYGHANFALLFFFGHLWHGGRTIFRDVFTGI |
| PsbX | X | 34 | Stephanocyclus Meneghinianus | MTASLSNFIASLIAGGVVVGVIAIALIVISKSDR |
| PsbY | Y | 33 | Stephanocyclus Meneghinianus | DTRLLVIAAPVLVAASWALFNIGRLAIQQIQRL |
| PsbZ | Z | 59 | Stephanocyclus Meneghinianus | MITALTALFVLVSLALVVTVPVALATPGEWETSKDQFNKIFQLWVGLVVAIATADGIST |
| FCPII-G, fucoxanthin chlorophyll a/c binding protein | 5 | 169 | Stephanocyclus Meneghinianus | APPGLVGALPPVGFFDPAGFAAKASPEELSRYREVEIMHGRFAQLAVLGFIIPEKCAYDGSFGDDFLAPTGRALEVFNTDPLWLGLTLAVISALETVRLIETEPGTRTDAKIESLGWRPKTESEYINYQVRELQQGRLAMLAFAGEVAQELVNDKPLLVNLQDSGFVSW |
| FCPII-G, fucoxanthin chlorophyll a/c binding protein | 0 | 169 | Stephanocyclus Meneghinianus | APPGLVGALPPVGFFDPAGFAAKASPEELSRYREVEIMHGRFAQLAVLGFIIPEKCAYDGSFGDDFLAPTGRALEVFNTDPLWLGLTLAVISALETVRLIETEPGTRTDAKIESLGWRPKTESEYINYQVRELQQGRLAMLAFAGEVAQELVNDKPLLVNLQDSGFVSW |
| FCPII-H2, fucoxanthin chlorophyll a/c binding protein | 7 | 164 | Stephanocyclus Meneghinianus | FENELGVIAPTGFFDPLGLSKNISKEKFDEYRTAELKHGRAAMLAVLGYIAPETYRFGFDIAPGVSTYDIPNGVAAIDYIPALGWAQIIFLIGAVDYWGVLGDFSFGKPDLGDKEEERKLQELQHGRLAMLAFLELLRHDSQNFVSPGFDGYDKMITGLPFMYG |
| FCPII-H2, fucoxanthin chlorophyll a/c binding protein | 2 | 164 | Stephanocyclus Meneghinianus | FENELGVIAPTGFFDPLGLSKNISKEKFDEYRTAELKHGRAAMLAVLGYIAPETYRFGFDIAPGVSTYDIPNGVAAIDYIPALGWAQIIFLIGAVDYWGVLGDFSFGKPDLGDKEEERKLQELQHGRLAMLAFLELLRHDSQNFVSPGFDGYDKMITGLPFMYG |
| FCPII-H1, fucoxanthin chlorophyll a/c binding protein | 6 | 164 | Stephanocyclus Meneghinianus | FENELGVIAPTGFFDPLGFTQDIDQEKFDQYRTAELKHGRVAQLAVVGYVVPEFFRWGFDIAPGIACADVPNGVAAINAIPALGWAQIIFAIGAVDVRGWFGNFDIGKPDLKGKEEERALQELQHGRLAMLAILELLRHDSQNLVKPGFDGLDNLITGLPFLYN |
| FCPII-H1, fucoxanthin chlorophyll a/c binding protein | 1 | 164 | Stephanocyclus Meneghinianus | FENELGVIAPTGFFDPLGFTQDIDQEKFDQYRTAELKHGRVAQLAVVGYVVPEFFRWGFDIAPGIACADVPNGVAAINAIPALGWAQIIFAIGAVDVRGWFGNFDIGKPDLKGKEEERALQELQHGRLAMLAILELLRHDSQNLVKPGFDGLDNLITGLPFLYN |
| FCPII-I, fucoxanthin chlorophyll a/c binding protein | P | 214 | Stephanocyclus Meneghinianus | SPRALPFGSAPATLDGSLVGDVGFDPIGFSTAPFASFNNPLYKEGDFMSDLEWLREAELTHGRIAQLAVLGFIWPALFGTFPGNENFGGADAFSYVNPLEAITHVPDLAIYQIVGGMAWVEYQRVIRIKEQGKNRVSGDIGLGYPGGWNPFNLNYSPEEYAEKQLQEIKHCRLAMIGAFGLFFQALNSGTDIVSQLSPAFAAPDYAAKAGYFLP |
| FCPII-K, fucoxanthin chlorophyll a/c binding protein | 4 | 153 | Stephanocyclus Meneghinianus | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| FCPII-K, fucoxanthin chlorophyll a/c binding protein | 9 | 153 | Stephanocyclus Meneghinianus | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| FCPII-J, fucoxanthin chlorophyll a/c binding protein | 3 | 163 | Stephanocyclus Meneghinianus | ENEIGALAPTGFFDPAKLSDGISQEKFDQYRLAELKHGRAAMLAVLGYVAPETYRFGYDLIPGELSTRDIPNGVAALNAIPFGGWVQMIAFVGTVEAYGWFTSPTGVLDLPADILAKRQTSELQHGRLAMLAFLELIRHDSQNLAQPGFDGYDNLITGLPFLY |
| FCPII-J, fucoxanthin chlorophyll a/c binding protein | 8 | 163 | Stephanocyclus Meneghinianus | ENEIGALAPTGFFDPAKLSDGISQEKFDQYRLAELKHGRAAMLAVLGYVAPETYRFGYDLIPGELSTRDIPNGVAALNAIPFGGWVQMIAFVGTVEAYGWFTSPTGVLDLPADILAKRQTSELQHGRLAMLAFLELIRHDSQNLAQPGFDGYDNLITGLPFLY |
| PsbC | C | 450 | Stephanocyclus Meneghinianus | IAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGLMVFWAGAMVLFEVSHFVPEKPTYEQGFILIQHLATLGYGIGPGGEITSTVPYFAVGVIHLISSAILGFGGIYHSLLGPDTLEESFPFFGYDWRDKNKMTTILGIHLCLLGLGSFLLVIKAMYLGGVYDTWAPGGGDVRYITTPTLNPIVIFGYVFRSPFGGDGWVVSVNNMEDVIGGHIWVGILCIVGGIWHIFTKPFAWARRAFVWSGEAYLSYSLAAISLMGFTAALYSWYNNTAYPSELYGPTGPEASQAQAFTFLVRDQRLGANVSSAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDINKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSPRSWLCCSHFFLAFFFLVGHWWHAGRARAAAAGFEKGIDRDFEPVLSMTPL |
| PsbD | D | 340 | Stephanocyclus Meneghinianus | GLFDLVDDWLKKDRFVFVGWSGLLLFPTAYLAAGGWMTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSVGHSLLLLWGPEAQGDFTRWCQIGGLWTFVALHGAFGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAVFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSSIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNHLLDEGIRAWMAAQDQPHENFVFPEEVLPRGNAL |
| PsbE | E | 75 | Stephanocyclus Meneghinianus | RPFSDIITSVRYWIIHSITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKG |
| PsbF | F | 31 | Stephanocyclus Meneghinianus | IFTFRWLAVHGLAIPTVFFLGGITAMQFIQR |
| PsbH | H | 65 | Stephanocyclus Meneghinianus | ALRTRLGEILRPLNAEYGKVAPGWGTTPIMGIVMLAFLIFLVIILQIYNSSLIIENVDVDWANGI |
| PsbI | I | 34 | Stephanocyclus Meneghinianus | MLTLKILVYTTVIFFVSLFIFGFLSSDPSRNPNR |
| PsbJ | J | 34 | Stephanocyclus Meneghinianus | GRVPLWLVGLVGGFAVITIVSLFIYGSYSGLGSS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-04-23 Deposition Author(s): Li, Z.H. , Shen, J.R. , Shen, L.L. , Wang, W.D.