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8J1Q

Cryoem structure of sars cov-2 rbd and aptamer complex

PDB DOI: 10.2210/pdb8j1q/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM/DNA
Organism(s): Salmonella Enterica , Gammaretrovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-04-13
Deposition Author(s): Jang, S.K. , Lee, J.O. , Rahman, M.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

8j1q
Literature

Cryoem structure of sars cov-2 rbd and aptamer complex

Jang, S.K. , Lee, J.O. , Rahman, M.S.

Primary Citation of Related Structures: 8J1Q


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
AM032-0 e 80 NA TATCGAGCGTCCTGCCTTTGCGGAGGXGAACCXXACGXXCAACXGGAXCGXGXGXAGGXACACCGACAGCCACCCAGAAA
AM047-0 d 52 NA CTGXCGGXAAGGGAGCXAGXGXAXGCCCCXGAGXXGGGGAXAXCGCCGACAG

Proteins
Molecule Chains Sequence Length Organism Sequence
Fab Light chain (REGN10987) A 224 Salmonella Enterica , Gammaretrovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSHHHHHHHH
Fab heavy chain (REGN10987) B 248 Salmonella Enterica , Gammaretrovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKSNSLVPRGSPSRLEEELRRRLTE
Spike protein S1 C 253 Salmonella Enterica , Gammaretrovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFENLYFQGAAAGGSHHHHHHGGSDYKDDDDK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-04-13
Deposition Author(s): Jang, S.K. , Lee, J.O. , Rahman, M.S.