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8IN8

Cryo-em structure of the target ssdna-bound sir2-apaz/ago-grna quaternary complex

PDB DOI: 10.2210/pdb8in8/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Geobacter Sulfurreducens (Strain Atcc 51573 / Dsm 12127 / Pca)

Deposited: 2023-03-08
Deposition Author(s): Li, X.Z. , Li, Z. , Wang, X.S. , Yu, G.M. , Zhang, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

8in8
Literature

Cryo-em structure of the target ssdna-bound sir2-apaz/ago-grna quaternary complex

Li, X.Z. , Li, Z. , Wang, X.S. , Yu, G.M. , Zhang, H.

Primary Citation of Related Structures: 8IN8


Proteins
Molecule Chains Sequence Length Organism Sequence
Sir2 superfamily protein B 587 Geobacter Sulfurreducens (Strain Atcc 51573 / Dsm 12127 / Pca) MDVLTDNEFYQHYLQNSQHMMWFLGAGTSRSAGLPTASDIIWDLKHRYYCLHENQDYQKHDINNHAIKSKIQSYMDSKGFPLQWSPEEYSFYFELVFRDDYEAQRKYLLEALASRKVSLNIGHRVLAALLEMNQTKVVFTTNFDDVIETAFSDISGKHLSVYHLEGSYAALSALNTEAFPIYAKIHGDFRYQKIKNLTPDLQTNDREIHKCFLAAAIRFGLVVSGYSGRDENVMTMLRAAIDQNNAFPHGLYWTVPSISKSEPAVQDLITYAQGKGVRAYLVETGTFDEMLSKIWRQVKDKPAAIDAKVRTARVCPVSIPLPGPGKSFPALRTNALPVVTQSIRCGVVTLASPITFSELKERISQKSPKALLTYTEKVLFLGGEPEIRKIFSNDEINSIGQYYIDEIAQSVAASTFLKSFVEEAILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYITGNVTNAKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFIRSRRRYRFNQCSYQILDAWIKILFGSIGGGGTVNISCFPDAEFKAEFEIGTRTAFSLGVGYGR
Piwi domain protein C 473 Geobacter Sulfurreducens (Strain Atcc 51573 / Dsm 12127 / Pca) MADNLSQLAAHSTIPEPLLLFKDNRTDTHPLRGLSQYGPYSACFNLPGQVRLAYLAPTEHMRKLDAIVRELQNPATPKEATNYYVEYGGFEKVFKVPLVMPQEHLRCLALDECHGVAANGNGLALADKIVQSMSGLFRQKHAFDVLLVYLPASWKKCFEYDGFDLHDRIKAKVAPLNLPIQIINDTALTRQCRANVMWGVSVALYAKAGGIPWKLADWDKDEAYIGLSYAIKKNAEGQEYTTCCSQVFDPDGTGFEFVAYDTREFITDRKGNPYLSYQEMQSVLSKSLHLYQSSHNGRMPRKIFIHKTTHFTEDEIQGAFDSFSSSTEIELVQIIQSTNWYGLKVDGKKGDKPVAPASYPVDRGLYQPLTESECLLWTQGSVMGVNQQNPGQPVFKEAALTPLPNPIMLRRFSGNGGWHATCSSILALTKVDWNNNTLYKKLPVTLVYSQVFADVVKQTPEIVNEIYDYRFFM

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(P*AP*UP*AP*AP*UP*GP*GP*UP*UP*UP*CP*UP*UP*AP*GP*AP*CP*GP*UP*CP*GP*UP*UP*U)-3') i 24 NA AUAAUGGUUUCUUAGACGUCGUUU
DNA (5'-D(P*AP*AP*CP*GP*AP*CP*GP*TP*CP*TP*AP*AP*GP*AP*AP*AP*CP*CP*AP*TP*TP*AP*A)-3') j 23 NA AACGACGTCTAAGAAACCATTAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-03-08
Deposition Author(s): Li, X.Z. , Li, Z. , Wang, X.S. , Yu, G.M. , Zhang, H.