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FASTA Sequence PDB Format mmCIF Format
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8GKH

Structure of the spizellomyces punctatus fanzor (spufz) in complex with omega rna and target dna

PDB DOI: 10.2210/pdb8gkh/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Methanosarcina Mazei , Spizellomyces Punctatus , Synthetic Construct

Deposited: 2023-03-19
Deposition Author(s): Saito, M. , Xu, P. , Zhang, F.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

8gkh
Literature

Structure of the spizellomyces punctatus fanzor (spufz) in complex with omega rna and target dna

Saito, M. , Xu, P. , Zhang, F.

Primary Citation of Related Structures: 8GKH


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*CP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*CP*AP*TP*A)-3') n 15 NA CGGTACCCGGGCATA
DNA (35-MER) t 35 NA TTGATTTCATAACCTATAGATATGCCCGGGTACCG
RNA (78-MER) w 78 NA UCCGAGCCGGUAGUCGCGCGGUUCAAUCCCUGGUGCGGGUGCUAGUGCACCGGCUCCGCACUAUCUAUAGGUUAUGAA

Proteins
Molecule Chains Sequence Length Organism Sequence
Maltodextrin-binding protein (Fragment),OrfB_Zn_ribbon domain-containing protein P 1032 Methanosarcina Mazei , Spizellomyces Punctatus , Synthetic Construct MKSSHHHHHHHHHHGSSMKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTGSENLYFQSNAPPKKKQKLERLKKLDKPTLHTCNKTSFAKAFLPNETYRQRLLDYIAIIHQLADHASHALKFYILSTSTSSFPVVHEDTIEAILYLLNKGEAWHPRKEAKKAWRDCLLPYVQRYCQIVGFIHPNLRGEQQSINYLTVSMMTNLKVNVQEHFMQMLLRYINLRFDVKGQKQRLPPKSDARKAFFTRLRYLKSVFLFDVVPELEFLDDLTPLESEVLEEIWSLDLPFLPNDPLAYAIVADPMSFFPAYCKLSGLYEQYGFQRFSAIPLRRSLIQSHVRIDTIILYQHILCITRRDAETVEKDDLWMRVCNLCTKAFRSRCGMHFEGSITTDGASVSVYLKHPEADKYGKRGARKSANTVAAEVKALYVENNLPACRAAENVVVIDPNKRDILYCQDSNGTTFRYTANQRAVETGSRRFAKRREAMKEEAGVDLIESRIPSHKTMNLMDFTRYLLVRRADWDRRKEFYSHPAHTRWKWHSFINRQKSESDLISNMRNKYGENFTVVMGDWSDAGRTARFQTSSKTKGWRTLFKRNRIDCFLLDEYKTSSVCPRCSSSEFVEKKFKTRPHSRPWRRREGKIEKVHGLLGCTNPNCLQQAWTSGMRYWNRDMLSTCNMLLIVRSMLDGHGRPEVFSRSVPAVA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-03-19
Deposition Author(s): Saito, M. , Xu, P. , Zhang, F.