8GH6
Bombyx mori r2 retrotransposon initiating target-primed reverse transcription
PDB DOI: 10.2210/pdb8gh6/pdb
Classification: RNA BINDING PROTEIN/RNA/DNA Organism(s): Bombyx Mori , Synthetic Construct
Deposited: 2023-03-09 Deposition Author(s): Wilkinson, M.E. , Zhang, F.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.08 Å
Bombyx mori r2 retrotransposon initiating target-primed reverse transcription
Primary Citation of Related Structures: 8GH6
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Reverse transcriptase-like protein | A | 1114 | Bombyx Mori , Synthetic Construct | MMASTALSLMGRCNPDGCTRGKHVTAAPMDGPRGPSSLAGTFGWGLAIPAGEPCGRVCSPATVGFFPVAKKSNKENRPEASGLPLESERTGDNPTVRGSAGADPVGQDAPGWTCQFCERTFSTNRGLGVHKRRAHPVETNTDAAPMMVKRRWHGEEIDLLARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHLARFGSQPGPSSGGCSAEPDFRRASGAEEAGEERCAEDAAAYDPSAVGQMSPDAARVLSELLEGAGRRRACRAMRPKTAGRRNDLHDDRTASAHKTSRQKRRAEYARVQELYKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRAEWHGGNRDYTQLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDFVQFVHTHINALPSRIRGSRGRRGGGESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVSFVAKAMEENKWTVELEPRLRTSVGLRKPDIIASRDGVGVIVDVQVVSGQRSLDELHREKRNKYGNHGELVELVAGRLGLPKAECVRATSCTISWRGVWSLTSYKELRSIIGLREPTLQIVPILALRGSHMNWTRFNQMTSVMGGGVG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 28S DNA bottom strand, 3' side | b | 70 | NA | TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCACAG |
| 28S DNA bottom strand, 5' side (priming strand) | p | 24 | NA | TTAGATGACGAGGCATTTGGCTAT |
| R2Bm 3'UTR RNA | r | 253 | NA | GCCUUGCACAGUAGUCCAGCGGUAAGGGUGUAGAUCAGGCCCGUCUGUUUCUCCCCCGGAGCUCGCUCCCUUGGCUUCCCUUAUAUAUUUUAACAUCAGAAACAGACAUUAAACAUCUACUGAUCCAAUUUCGCCGGCGUACGGCCACGAUCGGGAGGGUGGGAAUCUCGGGGGUCUUCCGAUCCUAAUCCAUGAUGAUUACGACCUGAGUCACUAAAGACGAUGGCAUGAUGAUCCGGCGAUGAAAAUAGCC |
| 28S DNA top strand | t | 70 | NA | CTGTGAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-03-09 Deposition Author(s): Wilkinson, M.E. , Zhang, F.