8FR8
Structure of mycobacterium smegmatis rsh bound to a 70s translation initiation complex
PDB DOI: 10.2210/pdb8fr8/pdb
Classification: TRANSLATION Organism(s): Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct
Deposited: 2023-01-06 Deposition Author(s): Agrawal, R.K. , Banavali, N.K. , Majumdar, S. , Manjari, S.R. , Sharma, M.R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.76 Å
Structure of mycobacterium smegmatis rsh bound to a 70s translation initiation complex
Agrawal, R.K. , Banavali, N.K. , Majumdar, S. , Manjari, S.R. , Sharma, M.R.
Primary Citation of Related Structures: 8FR8
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L19 | C | 113 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNIDHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR |
| 30S ribosomal protein S9 | K | 126 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | PIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR |
| 30S ribosomal protein S10 | L | 99 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | GQKIRIRLKAYDHEAIDASARKIVETVTRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDALMRIDLPASVDVNIQ |
| 30S ribosomal protein S11 | M | 115 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | KNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTISDVTPQPHNGCRPPKRRR |
| 30S ribosomal protein S18 1 | O | 84 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | MMAVKKSRKRTAATELKKPRRNQLEALGVTTIDYKDVAVLRTFLSERGKIRSRHVTGLTPQQQRQVATAIKNAREMALLPMAGP |
| 30S ribosomal protein S15 | P | 88 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | ALTAEQKKEILGQYGLHDTDTGSPEAQVALLTKRIQDLTEHLKVHKHDHHSRRGLLLLVGRRRRLLKYVAQVDVARYRSLIERLGLRR |
| 30S ribosomal protein S16 | Q | 113 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | AVKIKLTRLGKIRNPQYRIIVADARTRRDGRAIEVIGRYHPKEEPSLIQIDSERAQYWLGVGAQPTEPVLALLKITGDWQKFKGLPGAEGTLKVKEPKPSKLDLFNAALAEAE |
| 30S ribosomal protein S17 | R | 94 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | QKGPKYTPAAEKPRGRRKTAIGYVVSDKMQKTIVVELEDRKSHPLYGKIIRTTKKVKAHDENGEAGIGDRVSLMETRPLSATKRWRLVEILEKA |
| 50S ribosomal protein L11 | S | 133 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | LIKLQIQAGQANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGNVIPVEITVYEDRSFTFALKTPPAAKLLLKAAGVQKGSGEPHKTKVAKVTWDQVREIAETKKADLNANDIDAAAKIIAGTARSMGITVE |
| 30S ribosomal protein S20 | T | 85 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | ANIKSQIKRIRTNERRRLRNQSVKSSLRTAIRGFREAVDAGDKDKASELLHATSRKLDKAASKGVIHPNQAANKKSALALALNKL |
| 30S ribosomal protein S2 | U | 228 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | MAVVTMKQLLDSGAHFGHQTRRWNPKMKRFIFTDRNGIYIIDLQQTLTYIDKAYEFVKETVAHGGTVLFVGTKKQAQESIAEEATRVGMPYVNQRWLGGMLTNFSTVHKRLQRLKELEAMEQTGGFEGRTKKEILMLTREKNKLERSLGGIRDMQKVPSAVWVVDTNKEHIAVGEARKLGIPVIAILDTNCDPDVVDYPIPGNDDAIRSAALLTKVIASAVAEGLQAR |
| 50S ribosomal protein L22 | Y | 114 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | EFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPP |
| 30S ribosomal protein S13 | J | 116 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | ARLVGVDLPRDKRMEIALTYIYGIGRTRSNEILAATGIDKNMRTKDLTDDQVTVLRDYIEGNLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTI |
| 30S ribosomal protein S19 | D | 82 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | PRSLKKGPFVDDHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTEAMVGHKLGEFAPTRTFKGH |
| 50S ribosomal protein L20 | W | 124 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | ARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLIQGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPS |
| 50S ribosomal protein L35 | X | 63 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | PKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINKLLNG |
| 50S ribosomal protein L23 | Z | 97 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | ATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTKRAIVKLAAGSKPIDLFGA |
| 50S ribosomal protein L24 | 1 | 105 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI |
| 50S ribosomal protein L25 | 2 | 192 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | TANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGA |
| 30S ribosomal protein S4 | E | 200 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | ARYTGPATRKSRRLGVDLVGGDQSFEKRPYPPGQHGRARIKESEYRQQLQEKQKARFSYGVMEKQFRRYYEEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGHFLVNGVKVDIPSYRVSQYDIIDVKEKSLNTLPFQIARETAGERPIPSWLQVVGERQRILVHQLPERAQIDVPLTEQLIVELYSK |
| 50S ribosomal protein L27 | 4 | 79 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | SSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNIVPVARP |
| 50S ribosomal protein L29 | 6 | 64 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | GTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELG |
| 50S ribosomal protein L30 | 7 | 59 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | AELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVG |
| 50S ribosomal protein L32 | 8 | 54 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | AVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLD |
| 50S ribosomal protein L34 | 0 | 46 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | AKGKRTFQPNNRRRARVHGFRLRMRTRAGRAIVANRRSKGRRALTA |
| 30S ribosomal protein S5 | F | 180 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | NYIERVVSINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIAKGVEEARKNFFRVPLIGSTITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRESEALAAAAAREGSA |
| 30S ribosomal protein S6 | G | 96 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIYAVIDVKAEPATVSELDRQLNLNESVLRTKVLRTDKH |
| 50S ribosomal protein L31 | H | 82 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | MKPGIHPDYHPVVFQDAATGAQFLTRSTATSTRTIEWPTPSGPKTYPLIVVDVTSDSHPFWTGSARHIDSAGQVEKFRRRYG |
| GTP pyrophosphokinase RelA | I | 797 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | MVDEPGKGQAVQSPPAVPETVPKPPSGTAPTTTPAAPSTSSETARISASRRVRARLARRMTAQRSAINPVLEPLVAVHREIYPKADLQLLQRAYEVAEKRHADQLRKSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGYSLEALTADFGSEVGHLVDGVTKLDKVVLGSAAEGETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMATVKWELEDLAFAILHPKKYEEIVRLVADRAPSRDTYLAKVRAEIGVALSAMKINAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTREMHRTAEYGIAAHWRYKEAKGRNGVPHSHAAAEIDDMAWMRQLLDWQREAADPGEFLESLRYDLATQEIFVFTPKGDVITLPAGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEVFTSKAPNAGPSRDWQGFVVSPRAKTKIRQWFAKERREEALESGKDAIAREVRRGGLPLQRLMNAETMGALARELRYQDVSALYTAVGEGHVSARHVVQRLLAQFGGDDAAEDELAERSTPATMPMRQRSNDDTGVAVPGAPGVLTKLAKCCTPVPGDTIMGFVTRGGGVSVHRTDCTNAESLQQQSERIIEVNWAPSPSSVFLVAIQVEALDRHRLLSDVTRVLADEKVNILSASVTTSNDRVAISRFTFEMGDPKHLGHLLSVVRNVEGVYDVYRVTSAA |
| 50S ribosomal protein L16 | N | 136 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | MLIPRKVKHRKQHHPEQRGIASGGTSVSFGDYGIQALEHAYITNRQIESARIAINRHIKRGGKVWINIFPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSYPDEKTARDALTRAIHKLPIKARIVTREE |
| 30S ribosomal protein S14 | 9 | 100 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | AKKSKIVKNEQRRELVQRYAERRAELKRTIRDPASSPERRAAAVSALQRLPRDSSPVRLRNRDVVDGRPRGHLRKFGLSRVRVREMAHRGELPGVRKASW |
| 50S ribosomal protein eL31 | 3 | 23 | Mycolicibacterium Smegmatis Mc2 155 , Synthetic Construct | AKRGRKKRDRKHSKANHGKRPNA |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| mRNA | v | 20 | NA | AGGAGGUAAAAAUGUUCAAA |
| 23S rRNA (3119-MER) | a | 3119 | NA | AAGUGUUUAAGGGCGCAUGGUGGAUGCCUUGGCACUGGGAGCCGAUGAAGGACGUAGGAGGCUGCGAUAAGCCUCGGGGAGCUGUCAACCGAGCGUUGAUCCGAGGAUGUCCGAAUGGGGAAACCCGGCACGAGUGAUGUCGUGUCACCAGGCGCUGAAUAUAUAGGCGUCUGGGGGGAACGCGGGGAAGUGAAACAUCUCAGUACCCGUAGGAAGAGAAAACAAAAUGUGAUUCCGUGAGUAGUGGCGAGCGAAAGCGGAGGAUGGCUAAACCGUAUGCAUGUGAUACCGGGUAGGGGUUGUGUGUGCGGGGUUGUGGGACCUAUCUUUCCGGCUCUACCUGGCUGGAGGGCAGUGAGAAAAUGUUGUGGUUAGCGGAAAUGGCUUGGGAUGGCCUGCCGUAGACGGUGAGAGCCCGGUACGUGAAAACCCGACGUCUGUCUUGAUGGUGUUCCCGAGUAGCAGCGGGCCCGUGGAAUCUGCUGUGAAUCUGCCGGGACCACCCGGUAAGCCUGAAUACUUCCCAGUGACCGAUAGCGGAUUAGUACCGUGAGGGAAUGGUGAAAAGUACCCCGGGAGGGGAGUGAAAGAGUACCUGAAACCGUGCGCUUACAAUCCGUCAGAGCCCUCGACGUGUCGUGGGGUGAUGGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUCAGGGACAUGUCGCGAGGUUAACCCGGGUGGGGUAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGUAUCCACACAAGAGUGUGUGGUGUAGUGGUGUGUUCUGGACCCGAAGCGGAGUGAUCUACCCAUGGCCAGGGUGAAGCGCGGGUAAGACCGCGUGGAGGCCCGAACCCACUUAGGUUGAAGACUGAGGGGAUGAGCUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUCGCAUGUUUCUUGCCGGAGGUAGAGCUACUGGAUGGCCGAUGGGCCCCACAGGGUUACUGACGUCAGCCAAACUCCGAAUGCCGGUAAGUCCAAGAGUGCGGCAGUGAGACGGCGGGGGAUAAGCUCCGUGCGUCGAGAGGGAAACAGCCCAGAUCGCCGGCUAAGGCCCCUAAGCGUGUGCUAAGUGGAAAAGGAUGUGCAGUCGCGAAGACAACCAGGAGGUUGGCUUAGAAGCAGCCACCCUUGAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUGUGCGCCGAUAAUGUAGCGGGGCUCAAGCACACCGCCGAAGCCGCGGCAGCCAACGUGUUGGCUGGGUAGGGGAGCGUCCUGCAUCCGGUGAAGCCGCCGAGUGAUCGAGUGGUGGAGGGUGUGGGAGUGAGAAUGCAGGCAUGAGUAGCGAUUAGGCAAGUGAGAACCUUGCCCGCCGAAAGACCAAGGGUUCCUGGGCCAGGCCAGUCCGCCCAGGGUGAGUCGGGACCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGACAACGGGUUGAUAUUCCCGUACCCGUGUAUGUGCGUCCAUGAUGAAUCAGCGGUACUAACCAUCCAAAACCACCGUGACCGCACCUUUCGGGGUGUGGCGUUGGUGGGGCUGCAUGGGACCUUCGUUGGUAGUAGUCAAGCGAUGGGGUGACGCAGGAAGGUAGCCGUACCGGUCAGUGGUAAUACCGGGGUAAGCCUGUAGGGAGUCAGAUAGGUAAAUCCGUCUGGCAUAUAUCCUGAGAGGUGAUGCAUAGCCGAGUGAGGCGAAUUCGGUGAUCCUAUGCUGCCGAGAAAAGCCUCUAGCGAGGACAUACACGGCCCGUACCCCAAACCAACACAGGUGGUCAGGUAGAGAAUACUAAGGCGUACGAGUGAACUAUGGUUAAGGAACUCGGCAAAAUGCCCCCGUAACUUCGGGAGAAGGGGGACCCACAUGGCGUGUAAGCCUUUACGGCCCAAGCGUGAGUGGGUGGCACAAACCAGUGAGAAGCGACUGUUUACUAAAAACACAGGUCCGUGCGAAGUCGCAAGACGAUGUAUACGGACUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGACCCGUUAACUCCCUUUGGGGGUGAAGCGGAGAAUUUAAGCCCCAGUAAACGGCGGUGGUAACUAUAACCAUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACUUCUCAACUGUCUCAACCAUAGACUCGGCGAAAUUGCACUACGAGUAAAGAUGCUCGUUACGCGCGGCAGGACGAAAAGACCCCGGGACCUUCACUACAACUUGGUAUUGGUGCUCGAUACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAGCUCACACGCCAGUGUGGGUGGAGUCGUUGUUGAAAUACCACUCUGAUCGUAUUGGGCCUCUAACCUCGGACCGUAUAUCCGGUUCAGGGACAGUGCCUGGUGGGUAGUUUAACUGGGGCGGUUGCCUCCUAAAAUGUAACGGAGGCGCCCAAAGGUUCCCUCAACCUGGACGGCAAUCAGGUGUUGAGUGUAAGUGCACAAGGGAGCUUGACUGCGAGACGGACAUGUCGAGCAGGGACGAAAGUCGGGACUAGUGAUCCGGCACCUCUGAGUGGAAGGGGUGUCGCUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGCAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCCGCGCGCGUCAGAAGCUUGAGGAAACCUGUCCCUAGUACGAGAGGACCGGGACGGACGAACCUCUGGUAUACCAGUUGUCCCACCAGGGGCACGGCUGGAUAGCCACGUUCGGACAGGAUAACCGCUGAAAGCAUCUAAGCGGGAAACCUCUUCCAAGACCAGGCUUCUCACCCUCUAGGAGGGAUAAGGCCCCCCGCAGACCACGGGAUUGAUAGACCAGACCUGGAAGCCUAGUAAUAGGUGCAGGGAACUGGCACUAACCGGCCGAAAACUUAC |
| 5S rRNA (118-MER) | b | 118 | NA | GUUACGGCGGUCCAUAGCGGCAGGGAAACGCCCGGUCCCAUCCCGAACCCGGAAGCUAAGCCUGCCAGCGCCGAUGAUACUACCCAUCCGGGUGGAAAAGUAGGACACCGCCGAACAC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-01-06 Deposition Author(s): Agrawal, R.K. , Banavali, N.K. , Majumdar, S. , Manjari, S.R. , Sharma, M.R.