8FLJ
Cas1-cas2/3 integrase and ihf bound to crispr leader, repeat and foreign dna
PDB DOI: 10.2210/pdb8flj/pdb
Classification: RECOMBINATION, DNA BINDING PROTEIN, HYDROLASE/DNA Organism(s): Pseudomonas Aeruginosa Pa14 , Synthetic Construct
Deposited: 2022-12-21 Deposition Author(s): Buyukyoruk, M. , Eng, E.T. , Gauvin, C. , Henriques, W.S. , Lander, G.C. , Neselu, K. , Santiago-Frangos, A. , Wiedenheft, B. , Wiegand, T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.48 Å
Cas1-cas2/3 integrase and ihf bound to crispr leader, repeat and foreign dna
Buyukyoruk, M. , Eng, E.T. , Gauvin, C. , Henriques, W.S. , Lander, G.C. , Neselu, K. , Santiago-Frangos, A. , Wiedenheft, B. , Wiegand, T.
Primary Citation of Related Structures: 8FLJ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CRISPR-associated endonuclease Cas1 | A | 341 | Pseudomonas Aeruginosa Pa14 , Synthetic Construct | MWSHPQFEKENLYFQGSMDDISPSELKTILHSKRANLYYLQHCRVLVNGGRVEYVTDEGRHSHYWNIPIANTTSLLLGTGTSITQAAMRELARAGVLVGFCGGGGTPLFSANEVDVEVSWLTPQSEYRPTEYLQRWVGFWFDEEKRLVAARHFQRARLERIRHSWLEDRVLRDAGFAVDATALAVAVEDSARALEQAPNHEHLLTEEARLSKRLFKLAAQATRYGEFVRAKRGSGGDPANRFLDHGNYLAYGLAATATWVLGIPHGLAVLHGKTRRGGLVFDVADLIKDSLILPQAFLSAMRGDEEQDFRQACLDNLSRAQALDFMIDTLKDVAQRSTVSA |
| CRISPR-associated endonuclease Cas1 | B | 341 | Pseudomonas Aeruginosa Pa14 , Synthetic Construct | MWSHPQFEKENLYFQGSMDDISPSELKTILHSKRANLYYLQHCRVLVNGGRVEYVTDEGRHSHYWNIPIANTTSLLLGTGTSITQAAMRELARAGVLVGFCGGGGTPLFSANEVDVEVSWLTPQSEYRPTEYLQRWVGFWFDEEKRLVAARHFQRARLERIRHSWLEDRVLRDAGFAVDATALAVAVEDSARALEQAPNHEHLLTEEARLSKRLFKLAAQATRYGEFVRAKRGSGGDPANRFLDHGNYLAYGLAATATWVLGIPHGLAVLHGKTRRGGLVFDVADLIKDSLILPQAFLSAMRGDEEQDFRQACLDNLSRAQALDFMIDTLKDVAQRSTVSA |
| CRISPR-associated endonuclease Cas1 | C | 341 | Pseudomonas Aeruginosa Pa14 , Synthetic Construct | MWSHPQFEKENLYFQGSMDDISPSELKTILHSKRANLYYLQHCRVLVNGGRVEYVTDEGRHSHYWNIPIANTTSLLLGTGTSITQAAMRELARAGVLVGFCGGGGTPLFSANEVDVEVSWLTPQSEYRPTEYLQRWVGFWFDEEKRLVAARHFQRARLERIRHSWLEDRVLRDAGFAVDATALAVAVEDSARALEQAPNHEHLLTEEARLSKRLFKLAAQATRYGEFVRAKRGSGGDPANRFLDHGNYLAYGLAATATWVLGIPHGLAVLHGKTRRGGLVFDVADLIKDSLILPQAFLSAMRGDEEQDFRQACLDNLSRAQALDFMIDTLKDVAQRSTVSA |
| CRISPR-associated endonuclease Cas1 | D | 341 | Pseudomonas Aeruginosa Pa14 , Synthetic Construct | MWSHPQFEKENLYFQGSMDDISPSELKTILHSKRANLYYLQHCRVLVNGGRVEYVTDEGRHSHYWNIPIANTTSLLLGTGTSITQAAMRELARAGVLVGFCGGGGTPLFSANEVDVEVSWLTPQSEYRPTEYLQRWVGFWFDEEKRLVAARHFQRARLERIRHSWLEDRVLRDAGFAVDATALAVAVEDSARALEQAPNHEHLLTEEARLSKRLFKLAAQATRYGEFVRAKRGSGGDPANRFLDHGNYLAYGLAATATWVLGIPHGLAVLHGKTRRGGLVFDVADLIKDSLILPQAFLSAMRGDEEQDFRQACLDNLSRAQALDFMIDTLKDVAQRSTVSA |
| Integration host factor subunit alpha | E | 102 | Pseudomonas Aeruginosa Pa14 , Synthetic Construct | GPMGALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS |
| Integration host factor subunit alpha | G | 102 | Pseudomonas Aeruginosa Pa14 , Synthetic Construct | GPMGALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS |
| Integration host factor subunit beta | F | 96 | Pseudomonas Aeruginosa Pa14 , Synthetic Construct | GPMTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPE |
| Integration host factor subunit beta | H | 96 | Pseudomonas Aeruginosa Pa14 , Synthetic Construct | GPMTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPE |
| CRISPR-associated nuclease/helicase Cas3 subtype I-F/YPEST | M | 1076 | Pseudomonas Aeruginosa Pa14 , Synthetic Construct | MNILLVSQCEKRALSETRRILDQFAERRGERTWQTPITQAGLDTLRRLLKKSARRNTAVACHWIRGRDHSELLWIVGDASRFNAQGAVPTNRTCRDILRKEDENDWHSAEDIRLLTVMAALFHDIGKASQAFQAKLRNRGKPMADAYRHEWVSLRLFEAFVGPGSSDEDWLRRLADKRETGDAWLSQLARDDRQSAPPGPFQKSRLPPLAQAVGWLIVSHHRLPNGDHRGSASLARLPAPIQSQWCGARDADAKEKAACWQFPHGLPFASAHWRARTALCAQSMLERPGLLARGPALLHDSYVMHVSRLILMLADHHYSSLPADSRLGDPNFPLHANTDRDSGKLKQRLDEHLLGVALHSRKLAGTLPRLERQLPRLARHKGFTRRVEQPRFRWQDKAYDCAMACREQAMEHGFFGLNLASTGCGKTLANGRILYALADPQRGARFSIALGLRSLTLQTGQAYRERLGLGDDDLAILVGGSAARELFEKQQERLERSGSESAQELLAENSHVHFAGTLEDGPLREWLGRNSAGNRLLQAPILACTIDHLMPASESLRGGHQIAPLLRLMTSDLVLDEVDDFDIDDLPALSRLVHWAGLFGSRVLLSSATLPPALVQGLFEAYRSGREIFQRHRGAPGRATEIRCAWFDEFSSQSSAHGAVTSFSEAHATFVAQRLAKLEQLPPRRQAQLCTVHAAGEARPALCRELAGQMNTWMADLHRCHHTEHQGRRISFGLLRLANIEPLIELAQAILAQGAPEGLHVHLCVYHSRHPLLVRSAIERQLDELLKRSDDDAAALFARPTLAKALQASTERDHLFVVLASPVAEVGRDHDYDWAIVEPSSMRSIIQLAGRIRRHRSGFSGEANLYLLSRNIRSLEGQNPAFQRPGFETPDFPLDSHDLHDLLDPALLARIDASPRIVEPFPLFPRSRLVDLEHRRLRALMLADDPPSSLLGVPLWWQTPASLSGALQTSQPFRAGAKERCYALLPDEDDEERLHFSRYEEGTWSNQDNLLRNLDLTYGPRIQTWGTVNYREELVAMAGREDLDLRQCAMRYGEVRLRENTQGWSYHPYLGFKKYN |
| CRISPR-associated nuclease/helicase Cas3 subtype I-F/YPEST | N | 1076 | Pseudomonas Aeruginosa Pa14 , Synthetic Construct | MNILLVSQCEKRALSETRRILDQFAERRGERTWQTPITQAGLDTLRRLLKKSARRNTAVACHWIRGRDHSELLWIVGDASRFNAQGAVPTNRTCRDILRKEDENDWHSAEDIRLLTVMAALFHDIGKASQAFQAKLRNRGKPMADAYRHEWVSLRLFEAFVGPGSSDEDWLRRLADKRETGDAWLSQLARDDRQSAPPGPFQKSRLPPLAQAVGWLIVSHHRLPNGDHRGSASLARLPAPIQSQWCGARDADAKEKAACWQFPHGLPFASAHWRARTALCAQSMLERPGLLARGPALLHDSYVMHVSRLILMLADHHYSSLPADSRLGDPNFPLHANTDRDSGKLKQRLDEHLLGVALHSRKLAGTLPRLERQLPRLARHKGFTRRVEQPRFRWQDKAYDCAMACREQAMEHGFFGLNLASTGCGKTLANGRILYALADPQRGARFSIALGLRSLTLQTGQAYRERLGLGDDDLAILVGGSAARELFEKQQERLERSGSESAQELLAENSHVHFAGTLEDGPLREWLGRNSAGNRLLQAPILACTIDHLMPASESLRGGHQIAPLLRLMTSDLVLDEVDDFDIDDLPALSRLVHWAGLFGSRVLLSSATLPPALVQGLFEAYRSGREIFQRHRGAPGRATEIRCAWFDEFSSQSSAHGAVTSFSEAHATFVAQRLAKLEQLPPRRQAQLCTVHAAGEARPALCRELAGQMNTWMADLHRCHHTEHQGRRISFGLLRLANIEPLIELAQAILAQGAPEGLHVHLCVYHSRHPLLVRSAIERQLDELLKRSDDDAAALFARPTLAKALQASTERDHLFVVLASPVAEVGRDHDYDWAIVEPSSMRSIIQLAGRIRRHRSGFSGEANLYLLSRNIRSLEGQNPAFQRPGFETPDFPLDSHDLHDLLDPALLARIDASPRIVEPFPLFPRSRLVDLEHRRLRALMLADDPPSSLLGVPLWWQTPASLSGALQTSQPFRAGAKERCYALLPDEDDEERLHFSRYEEGTWSNQDNLLRNLDLTYGPRIQTWGTVNYREELVAMAGREDLDLRQCAMRYGEVRLRENTQGWSYHPYLGFKKYN |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CRISPR leader, sense strand of DNA | i | 139 | NA | AAGCTTCCGACCCTTTTTTCGGACGATTTAAAAAACCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCAAAAAACGCTTCGAAATCAACCGGTTATAGGTTTTCGGAGCTA |
| CRISPR leader and repeat, anti-sense strand of DNA | j | 171 | NA | TGATTTTCTTAGCTGCCTACACGGCAGTGAACTAGCTCCGAAAACCTATAACCGGTTGATTTCGAAGCGTTTTTTGAGTTTTTCCCGCCAGAAACCCTCTTTTTTCGAGGTCTCGTAACTTGCTGATTTATAAGGGTTTTTTAAATCGTCCGAAAAAAGGGTCGGAAGCTT |
| CRISPR repeat and prespacer, sense strand of DNA | k | 59 | NA | GTGCAAGTCGTTTTGCTAGAGCTACATGTTCACTGCCGTGTAGGCAGCTAAGAAAATCA |
| Prespacer, anti-sense strand of DNA | l | 27 | NA | GCTCTAGCAAAACGACTTGCACAACGA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-12-21 Deposition Author(s): Buyukyoruk, M. , Eng, E.T. , Gauvin, C. , Henriques, W.S. , Lander, G.C. , Neselu, K. , Santiago-Frangos, A. , Wiedenheft, B. , Wiegand, T.