PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8FD1

Crystal structure of photoactivated rhodopsin in complex with a nanobody

PDB DOI: 10.2210/pdb8fd1/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Bos Taurus , Lama Glama

Deposited: 2022-12-01
Deposition Author(s): Kiser, P.D. , Palczewski, K. , Salom, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.25 Å

8fd1
Literature

Crystal structure of photoactivated rhodopsin in complex with a nanobody

Kiser, P.D. , Palczewski, K. , Salom, D.

Primary Citation of Related Structures: 8FD1


Proteins
Molecule Chains Sequence Length Organism Sequence
Rhodopsin A 348 Bos Taurus , Lama Glama MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA
Rhodopsin B 348 Bos Taurus , Lama Glama MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA
Nanobody Nb2 C 126 Bos Taurus , Lama Glama QVQLVESGGGLVQPGGSLRLSCAASGFTFSKYAMNWVRQPPGKGLEWVSGIRPSGDNPTYADSVEGRFTIIRDNDKKMVYLQMTSLKTEDTAVYYCTRGYGTMTIEGQGTQVTVSSHHHHHHEPEA
Nanobody Nb2 D 126 Bos Taurus , Lama Glama QVQLVESGGGLVQPGGSLRLSCAASGFTFSKYAMNWVRQPPGKGLEWVSGIRPSGDNPTYADSVEGRFTIIRDNDKKMVYLQMTSLKTEDTAVYYCTRGYGTMTIEGQGTQVTVSSHHHHHHEPEA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-12-01
Deposition Author(s): Kiser, P.D. , Palczewski, K. , Salom, D.