8F4G
Rt xfel structure of photosystem ii 730 microseconds after the third illumination at 2.03 angstrom resolution
PDB DOI: 10.2210/pdb8f4g/pdb
Classification: PHOTOSYNTHESIS Organism(s): Thermosynechococcus Vestitus Bp-1
Deposited: 2022-11-10 Deposition Author(s): Adams, P.D. , Alonso-Mori, R. , Aydin, O. , Batyuk, A. , Bergmann, U. , Bhowmick, A. , Bogacz, I. , Brewster, A.S. , Chatterjee, R. , Cheah, M.H. , Chernev, P. , Dasgupta, M. , Dobbek, H. , Doyle, M.D. , Fransson, T. , Fuller, F.D. , Gatcke, J. , Gee, L.B. , Haupt, S. , Holton, J.M. , Hussein, R. , Ibrahim, M. , Kaminsky, C.J. , Keable, S.M. , Kern, J. , Kim, I.-S. , Makita, H. , Mamedov, F. , Messinger, J. , Moriarty, N.W. , Nangca, I.I. , Owada, S. , Paley, D.W. , Sauter, N.K. , Simon, P.S. , Tono, K. , Yachandra, V.K. , Yano, J. , Zhang, M. , Zouni, A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.03 Å
Rt xfel structure of photosystem ii 730 microseconds after the third illumination at 2.03 angstrom resolution
Adams, P.D. , Alonso-Mori, R. , Aydin, O. , Batyuk, A. , Bergmann, U. , Bhowmick, A. , Bogacz, I. , Brewster, A.S. , Chatterjee, R. , Cheah, M.H. , Chernev, P. , Dasgupta, M. , Dobbek, H. , Doyle, M.D. , Fransson, T. , Fuller, F.D. , Gatcke, J. , Gee, L.B. , Haupt, S. , Holton, J.M. , Hussein, R. , Ibrahim, M. , Kaminsky, C.J. , Keable, S.M. , Kern, J. , Kim, I.-S. , Makita, H. , Mamedov, F. , Messinger, J. , Moriarty, N.W. , Nangca, I.I. , Owada, S. , Paley, D.W. , Sauter, N.K. , Simon, P.S. , Tono, K. , Yachandra, V.K. , Yano, J. , Zhang, M. , Zouni, A.
Primary Citation of Related Structures: 8F4G
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 1 | A | 344 | Thermosynechococcus Vestitus Bp-1 | MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 46 | Thermosynechococcus Vestitus Bp-1 | MIDALVLVAKLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Vestitus Bp-1 | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 36 | Thermosynechococcus Vestitus Bp-1 | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQKSS |
| Photosystem II manganese-stabilizing polypeptide | O | 272 | Thermosynechococcus Vestitus Bp-1 | MKYRILMATLLAVCLGIFSLSAPAFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein T | T | 32 | Thermosynechococcus Vestitus Bp-1 | METITYVFIFACIIALFFFAIFFREPPRITKK |
| Photosystem II 12 kDa extrinsic protein | U | 134 | Thermosynechococcus Vestitus Bp-1 | MQRLGRWLALAYFVGVSLLGWINWSAPTLAATASTEEELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 163 | Thermosynechococcus Vestitus Bp-1 | MLKKCVWLAVALCLCLWQFTMGTALAAELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein Ycf12 | Y | 46 | Thermosynechococcus Vestitus Bp-1 | MGIFNGIIEFLSNINFEVIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Photosystem II reaction center X protein | X | 41 | Thermosynechococcus Vestitus Bp-1 | MTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Vestitus Bp-1 | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP47 reaction center protein | B | 510 | Thermosynechococcus Vestitus Bp-1 | MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRRKEAV |
| Photosystem II protein Y | R | 41 | Thermosynechococcus Vestitus Bp-1 | MDWRVLVVLLPVLLAAGWAVRNILPYAVKQVQKLLQKAKAA |
| Photosystem II CP43 reaction center protein | C | 461 | Thermosynechococcus Vestitus Bp-1 | MVTLSSNSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 352 | Thermosynechococcus Vestitus Bp-1 | MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 84 | Thermosynechococcus Vestitus Bp-1 | MAGTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 45 | Thermosynechococcus Vestitus Bp-1 | MTSNTPNQEPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 66 | Thermosynechococcus Vestitus Bp-1 | MARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG |
| Photosystem II reaction center protein I | I | 38 | Thermosynechococcus Vestitus Bp-1 | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE |
| Photosystem II reaction center protein J | J | 40 | Thermosynechococcus Vestitus Bp-1 | MMSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2022-11-10 Deposition Author(s): Adams, P.D. , Alonso-Mori, R. , Aydin, O. , Batyuk, A. , Bergmann, U. , Bhowmick, A. , Bogacz, I. , Brewster, A.S. , Chatterjee, R. , Cheah, M.H. , Chernev, P. , Dasgupta, M. , Dobbek, H. , Doyle, M.D. , Fransson, T. , Fuller, F.D. , Gatcke, J. , Gee, L.B. , Haupt, S. , Holton, J.M. , Hussein, R. , Ibrahim, M. , Kaminsky, C.J. , Keable, S.M. , Kern, J. , Kim, I.-S. , Makita, H. , Mamedov, F. , Messinger, J. , Moriarty, N.W. , Nangca, I.I. , Owada, S. , Paley, D.W. , Sauter, N.K. , Simon, P.S. , Tono, K. , Yachandra, V.K. , Yano, J. , Zhang, M. , Zouni, A.