Streptomyces venezuelae rnap unconstrained open promoter complex with whia and whib transcription factors
PDB DOI: 10.2210/pdb8dy9/pdb
Classification: TRANSCRIPTION/TRANSFERASE/DNA Organism(s): Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct
Deposited: 2022-08-03 Deposition Author(s): Campbell, E.A. , Lilic, M.
Streptomyces venezuelae rnap unconstrained open promoter complex with whia and whib transcription factors
Primary Citation of Related Structures: 8DY9
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
DNA-directed RNA polymerase subunit alpha | A | 340 | Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct | MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHNPDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTDAALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAKLAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY |
DNA-directed RNA polymerase subunit alpha | B | 340 | Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct | MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHNPDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTDAALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAKLAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY |
DNA-directed RNA polymerase subunit beta | C | 1178 | Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct | MQGTGTRVVSPSPRKDPLLAASRNASTNTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNAAWKARVEAALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKDRDFTYGAPLFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSIDKTSDKDIFSAKIIPSRGAWLEMEIDKRDLVGVRIDRKRKQSVTVLLKALGWTTEQILQEFGEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVGRYKVNKKLGADEPLDAGVLTTDDVIATIKYLVKLHAGETETIGENGNEIVVETDDIDHFGNRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLASYGRVNAFGFIETPYRKVVDGQVTDEVDYVTADEEDRFVIAQANAALDEELRFSENRVLVRKRGGEVDYVEPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQAVPLIKSEAPLVGTGMEYRCATDAGDVLKAEKDGVVQELSADYITVANDDGTYITYRLHKFSRSNQGTSVNQKVVVDEGDRVIEGQVLADGPATEDGEMALGKNLLVAFMPWEGHNYEDAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAEVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKIIGVRVFDREEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVDIILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLADEWAQRLQAIGADKVAPGTNVATPVFDGAREDELAGLLNHTIPNRDGERMVLPTGKARLFDGRSGEPFPDPISVGYMYILKLHHLVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFRAAEELGIDLSRREPSSVEEV |
DNA-directed RNA polymerase subunit beta' | D | 1298 | Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct | DDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKVIYFAAYMITYVDDERRTRDLPSLEAHVSVERQQIENRRDSDLEARAKKLENDLGELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELLYRELRDRFGTYFDGSMGAAALQKRLESFDLEEEAERLREIIRTGKGQKKTRALKRLKVVSAFLQTANSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGRTVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDTKGEGRAFGSTAEAIMAFDAGELALQSQIDIRFPVGTVAPRGWVPPVTEEGEPEWQQGDSFRLRTSLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFYWATRSGVTVAISDVVVPEAKKAIVKGYEEQDEKVQKQYERGLITKEERTQELIAIWTKATNEVAEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLRIAERGADGVLRKTDDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVGAGVEEVKTRSVLTCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVVELFEARQPKGVAPISEAAGRVRIEETEKTKKIVVTPDDGTDETAFPISKRARLLVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVAEVQKVYNSQGVSIHDKHIEIIIRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEEAKAAMYSAVGYDDIDYSPFGSGSGQAVPLEDYDYGPYNQ |
DNA-directed RNA polymerase subunit omega | E | 90 | Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct | MSSSITAPEGIINPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREINAGLLTSEAIEGPAQ |
RNA polymerase sigma factor SigA | F | 516 | Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct | FVSASTSRTLPPEIAESESVMALIERGKADGQIAGDDVRRAFEADQIPPTQWKNVLRSLNQILEEEGVTLMVSAAESPKRARKSVAAKSPAKRTATKTVTARTTVTKTTVTAAPASAAEDADPADEAGSAAKKTAAKKTVAKKTVAKKTVAKKTAAKKTTSKKDADELVEGEELLEDVAPGKGEEEETEGESKGFVLSDEDEDDAPAQQVAVAGATADPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAEDKLANSDKLAPKLKRELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD |
RNA polymerase-binding protein RbpA | G | 124 | Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct | MSERALRGTRLVVTSYETDRGIDLAPRQAVEYACEKGHRFEMPFSVEAEIPPEWECKVCGIQALLVDGDGPEEKKGKPARTHWDMLMERRTREELEEVLAERLAVLRSGAMNIAVHPRDSRKSA |
Transcriptional regulator WhiB | H | 87 | Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct | MTELFQELLVEDADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALQNDERFGIWGGLSERERRRLKKAAV |
Probable cell division protein WhiA | I | 327 | Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct | MTAAVKDEISRLPVTRTCCRKAEVSSILRFAGGLHLVSGRIVIEAELDTAMAARRLKRDILEIFGHSSELIVMAPGGLRRGSRFVVRVVAGGDQLARQTGLVDGRGRPIRGLPPQVVSGATCDAEAAWRGAFLAHGSLTEPGRSSSLEVTCPGPEAALALVGAARRLSIAAKAREVRGVDRVVVRDGDAIGALLTRLGAHESVLAWEERRMRREVRATANRLANFDDANLRRSARAAVAAGARVQRALEILGEEVPEHLAAAGRLRMEHKQASLEELGALADPPLTKDAVAGRIRRLLAMADKRAQDLGIPGTESNLTEELDDSLVG |
Nucleic Acids / Hybrid | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
DNA (38-MER) | p | 49 | NA | GGTGTCAAGCCAATTGGCCCGGTGTGTCGCACGATCTGGCTGATATCAC |
DNA (38-MER) | r | 49 | NA | GGTGTCAAGCCAATTGGCCCGGTGTGTCGCACGATCTGGCTGATATCAC |
DNA (38-MER) | o | 49 | NA | GTGATATCAGCCAGATCGTGCGACACACCGGGCCAATTGGCTTGACACC |
DNA (38-MER) | q | 49 | NA | GTGATATCAGCCAGATCGTGCGACACACCGGGCCAATTGGCTTGACACC |
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-08-03 Deposition Author(s): Campbell, E.A. , Lilic, M.