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8DW3

Cryo-em structure of sars-cov-2 rbd in complex with anti-sars-cov-2 darpin,sr16m, and two antibody fabs, s309 and cr3022

PDB DOI: 10.2210/pdb8dw3/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2022-07-30
Deposition Author(s): Gorman, J. , Kwon, Y.D. , Kwong, P.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.26 Å

8dw3
Literature

Cryo-em structure of sars-cov-2 rbd in complex with anti-sars-cov-2 darpin,sr16m, and two antibody fabs, s309 and cr3022

Gorman, J. , Kwon, Y.D. , Kwong, P.D.

Primary Citation of Related Structures: 8DW3


Proteins
Molecule Chains Sequence Length Organism Sequence
Anti-SARS-CoV-2 DARPin SR16m A 161 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 GKKLLEAARAGQDDEVRILMANGADVNALDLFGVTPLHLAAERGHLEIVEVLLKNGADVNAGDAFGRTPLHLAALGGHLEIVEVLLKNGADVNACDLYGVTPLHLAAGLGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQSSSKLAAAL
Spike protein S1 B 197 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG
Antibody S309 light chain C 214 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
antibody S309 heavy chain D 230 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
antibody CR3022 heavy chain H 221 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 TQMQLVQSGTEVKKPGESLKISCKGSGYGFITYWIGWVRQMPGKGLEWMGIIYPGDSETRYSPSFQGQVTISADKSINTAYLQWSSLKASDTAIYYCAGGSGISTPMDVWGQGTTVTVASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
antibody CR3022 light chain L 220 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DIQLTQSPDSLAVSLGERATINCKSSQSVLYSSINKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-30
Deposition Author(s): Gorman, J. , Kwon, Y.D. , Kwong, P.D.