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FASTA Sequence PDB Format mmCIF Format
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8DPL

Structure of ebov gp lacking the mucin-like domain with 2.1.1d5 scfv and 6d6 scfv bound

PDB DOI: 10.2210/pdb8dpl/pdb

Classification: VIRAL PROTEIN/Immune System
Organism(s): Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes

Deposited: 2022-07-15
Deposition Author(s): Saphire, E.O. , Yu, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.53 Å

8dpl
Literature

Structure of ebov gp lacking the mucin-like domain with 2.1.1d5 scfv and 6d6 scfv bound

Saphire, E.O. , Yu, X.

Primary Citation of Related Structures: 8DPL


Proteins
Molecule Chains Sequence Length Organism Sequence
2.1.1D5 heavy chain variable domain F 120 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMNWVRQAPGKGLEWVGRIKSKTDGGAADYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYFCTTVYRYNYDSVWGQGTLVTVSS
2.1.1D5 heavy chain variable domain A 120 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMNWVRQAPGKGLEWVGRIKSKTDGGAADYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYFCTTVYRYNYDSVWGQGTLVTVSS
2.1.1D5 heavy chain variable domain K 120 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMNWVRQAPGKGLEWVGRIKSKTDGGAADYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYFCTTVYRYNYDSVWGQGTLVTVSS
2.1.1D5 light chain variable domain G 112 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVYWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSFDSSLRDSWVFGGGTKLTVL
2.1.1D5 light chain variable domain B 112 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVYWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSFDSSLRDSWVFGGGTKLTVL
2.1.1D5 light chain variable domain L 112 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVYWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSFDSSLRDSWVFGGGTKLTVL
6D6 single-chain variable fragment H 243 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL
6D6 single-chain variable fragment C 243 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL
6D6 single-chain variable fragment O 243 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL
Glycoprotein GP1 I 280 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVS
Glycoprotein GP1 D 280 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVS
Glycoprotein GP1 M 280 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVS
Glycoprotein GP2 J 136 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPD
Glycoprotein GP2 E 136 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPD
Glycoprotein GP2 N 136 Borreliella Spielmanii A14S , Salmonella Enterica , Enterobacter Aerogenes EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-15
Deposition Author(s): Saphire, E.O. , Yu, X.