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8DPL

Structure of ebov gp lacking the mucin-like domain with 2.1.1d5 scfv and 6d6 scfv bound

PDB DOI: 10.2210/pdb8dpl/pdb

Classification: VIRAL PROTEIN/Immune System
Organism(s): Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus

Deposited: 2022-07-15
Deposition Author(s): Saphire, E.O. , Yu, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.53 Å

8dpl
Literature

Structure of ebov gp lacking the mucin-like domain with 2.1.1d5 scfv and 6d6 scfv bound

Saphire, E.O. , Yu, X.

Primary Citation of Related Structures: 8DPL


Proteins
Molecule Chains Sequence Length Organism Sequence
2.1.1D5 heavy chain variable domain F 120 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMNWVRQAPGKGLEWVGRIKSKTDGGAADYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYFCTTVYRYNYDSVWGQGTLVTVSS
2.1.1D5 heavy chain variable domain A 120 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMNWVRQAPGKGLEWVGRIKSKTDGGAADYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYFCTTVYRYNYDSVWGQGTLVTVSS
2.1.1D5 heavy chain variable domain K 120 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMNWVRQAPGKGLEWVGRIKSKTDGGAADYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYFCTTVYRYNYDSVWGQGTLVTVSS
2.1.1D5 light chain variable domain G 112 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVYWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSFDSSLRDSWVFGGGTKLTVL
2.1.1D5 light chain variable domain B 112 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVYWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSFDSSLRDSWVFGGGTKLTVL
2.1.1D5 light chain variable domain L 112 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVYWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSFDSSLRDSWVFGGGTKLTVL
6D6 single-chain variable fragment H 243 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL
6D6 single-chain variable fragment C 243 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL
6D6 single-chain variable fragment O 243 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL
Glycoprotein GP1 I 280 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVS
Glycoprotein GP1 D 280 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVS
Glycoprotein GP1 M 280 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVS
Glycoprotein GP2 J 136 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPD
Glycoprotein GP2 E 136 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPD
Glycoprotein GP2 N 136 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-15
Deposition Author(s): Saphire, E.O. , Yu, X.