8DFS
Type i-c cascade bound to acrif2
PDB DOI: 10.2210/pdb8dfs/pdb
Classification: RNA BINDING PROTEIN/RNA Organism(s): Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough
Deposited: 2022-06-22 Deposition Author(s): Bravo, J.P.K. , Hibshman, G.N. , O'Brien, R.E. , Ramos, D. , Taylor, D.W. , Wright, J.T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.0 Å
Type i-c cascade bound to acrif2
Bravo, J.P.K. , Hibshman, G.N. , O'Brien, R.E. , Ramos, D. , Taylor, D.W. , Wright, J.T.
Primary Citation of Related Structures: 8DFS
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| pre-crRNA processing endonuclease | A | 227 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | MTHGAVKTYGIRLRVWGDYACFTRPEMKVERVSYDVMPPSAARGILEAIHWKPAIRWIVDRIHVLRPIVFDNVRRNEVSSKIPKPNPATAMRDRKPLYFLVDDGSNRQQRAATLLRNVDYVIEAHFELTDKAGAEDNAGKHLDIFRRRARAGQSFQQPCLGCREFPASFELLEGDVPLSCYAGEKRDLGYMLLDIDFERDMTPLFFKAVMEDGVITPPSRTSPEVRA |
| CRISPR-associated protein, TM1801 family | B | 290 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML |
| CRISPR-associated protein, TM1801 family | C | 290 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML |
| CRISPR-associated protein, TM1801 family | D | 290 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML |
| CRISPR-associated protein, TM1801 family | E | 290 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML |
| CRISPR-associated protein, TM1801 family | F | 290 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML |
| CRISPR-associated protein, TM1801 family | G | 290 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML |
| CRISPR-associated protein, TM1801 family | H | 290 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML |
| CRISPR-associated protein, CT1133 family | I | 612 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | MILQALHGYYQRMSADPDAGMPPYGTSMENISFALVLDAKGTLRGIEDLREQEGKKLRPRKMLVPIAEKKGNGIKPNFLWENTSYILGVDAKGKQERTDKCHAAFIAHIKAYCDTADQDLAAVLQFLEHGEKDLSAFPVSEEVIGSNIVFRIEGEPGFVHERPAARQAWANCLNRREQGLCGQCLITGERQKPIAQLHPSIKGGRDGVRGAQAVASIVSFNNTAFESYGKEQSINAPVSQEAAFSYVTALNYLLNPSNRQKVTIADATVVFWAERSSPAEDIFAGMFDPPSTTAKPESSNGTPPEDSEEGSQPDTARDDPHAAARMHDLLVAIRSGKRATDIMPDMDESVRFHVLGLSPNAARLSVRFWEVDTVGHMLDKVGRHYRELEIIPQFNNEQEFPSLSTLLRQTAVLNKTENISPVLAGGLFRAMLTGGPYPQSLLPAVLGRIRAEHARPEDKSRYRLEVVTYYRAALIKAYLIRNRKLEVPVSLDPARTDRPYLLGRLFAVLEKAQEDAVPGANATIKDRYLASASANPGQVFHMLLKNASNHTAKLRKDPERKGSAIHYEIMMQEIIDNISDFPVTMSSDEQGLFMIGYYHQRKALFTKKNKEN |
| CRISPR-associated protein, CT1133 family | J | 124 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | VSLDPARTDRPYLLGRLFAVLEKAQEDAVPGANATIKDRYLASASANPGQVFHMLLKNASNHTAKLRKDPERKGSAIHYEIMMQEIIDNISDFPVTMSSDEQGLFMIGYYHQRKALFTKKNKEN |
| CRISPR-associated protein, CT1133 family | K | 124 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | VSLDPARTDRPYLLGRLFAVLEKAQEDAVPGANATIKDRYLASASANPGQVFHMLLKNASNHTAKLRKDPERKGSAIHYEIMMQEIIDNISDFPVTMSSDEQGLFMIGYYHQRKALFTKKNKEN |
| Anti-CRISPR protein 30 | M | 90 | Casadabanvirus D3112 , Desulfovibrio Vulgaris , Desulfovibrio Vulgaris Str. Hildenborough | MIAQQHKDTVAACEAAEAIAIAKDQVWDGEGYTKYTFDDNSVLIQSGTTQYAMDADDADSIKGYADWLDDEARSAEASEIERLLESVEEE |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (48-MER) | l | 48 | NA | GGAUUGAAACGCCAUGCUCAGGCUGGCGAGUGCGCGCCACUCAUCAAG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-06-22 Deposition Author(s): Bravo, J.P.K. , Hibshman, G.N. , O'Brien, R.E. , Ramos, D. , Taylor, D.W. , Wright, J.T.