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8DAO

Crystal structure of sars-cov-2 spike stem fusion peptide in complex with neutralizing antibody cov44-79

PDB DOI: 10.2210/pdb8dao/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2022-06-13
Deposition Author(s): Lee, C.C.D. , Lin, T.H. , Wilson, I.A. , Yuan, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.8 Å

8dao
Literature

Crystal structure of sars-cov-2 spike stem fusion peptide in complex with neutralizing antibody cov44-79

Lee, C.C.D. , Lin, T.H. , Wilson, I.A. , Yuan, M.

Primary Citation of Related Structures: 8DAO


Proteins
Molecule Chains Sequence Length Organism Sequence
COV44-79 heavy chain variable domain C 126 Homo Sapiens , Synthetic Construct QVQLVESGGGVVQPGRSLRLSCAASGLTFSGYAMHWVRQAPGKGLEWVAVISRDARNKYYADSVKGRFTISRDNSKKTVYLEMNSLRVEDTAVYYCAILIIPGITEPGSPDALDIWGQGTMVSVSS
COV44-79 heavy chain variable domain A 126 Homo Sapiens , Synthetic Construct QVQLVESGGGVVQPGRSLRLSCAASGLTFSGYAMHWVRQAPGKGLEWVAVISRDARNKYYADSVKGRFTISRDNSKKTVYLEMNSLRVEDTAVYYCAILIIPGITEPGSPDALDIWGQGTMVSVSS
COV44-79 light chain variable domain D 109 Homo Sapiens , Synthetic Construct DIQMTQSPSSMSASVGDRVTITCRASQDISKWLAWYQQRPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQASSFPWSITFGQGTRLEIR
COV44-79 light chain variable domain B 109 Homo Sapiens , Synthetic Construct DIQMTQSPSSMSASVGDRVTITCRASQDISKWLAWYQQRPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQASSFPWSITFGQGTRLEIR
COV44-79 heavy chain constant domain E 103 Homo Sapiens , Synthetic Construct ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
COV44-79 heavy chain constant domain G 103 Homo Sapiens , Synthetic Construct ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
COV44-79 light chain constant domain F 107 Homo Sapiens , Synthetic Construct RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
COV44-79 light chain constant domain H 107 Homo Sapiens , Synthetic Construct RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Spike protein S2 fusion peptide I 15 Homo Sapiens , Synthetic Construct PSKPSKRSFIEDLLF
Spike protein S2 fusion peptide J 15 Homo Sapiens , Synthetic Construct PSKPSKRSFIEDLLF
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-06-13
Deposition Author(s): Lee, C.C.D. , Lin, T.H. , Wilson, I.A. , Yuan, M.