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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8D5C

Anti-hiv-1 gp120-scd4 complex antibody cg10 fab in complex with b41-scd4

PDB DOI: 10.2210/pdb8d5c/pdb

Classification: VIRAL PROTEIN/Immune System
Organism(s): Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus

Deposited: 2022-06-04
Deposition Author(s): Bjorkman, P.J. , Gershoni, J.M. , Yang, Z.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

8d5c
Literature

Anti-hiv-1 gp120-scd4 complex antibody cg10 fab in complex with b41-scd4

Bjorkman, P.J. , Gershoni, J.M. , Yang, Z.

Primary Citation of Related Structures: 8D5C


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp41 X 153 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus AVGLGAFILGFLGAAGSTMGAASMALTVQARLLLSGIVQQQNNLLRAPEAQQHMLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKIICCTNVPWNDSWSNKTINEIWDNMTWMQWEKEIDNYTQHIYTLLEVSQIQQEKNEQELLELD
Envelope glycoprotein gp41 Y 153 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus AVGLGAFILGFLGAAGSTMGAASMALTVQARLLLSGIVQQQNNLLRAPEAQQHMLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKIICCTNVPWNDSWSNKTINEIWDNMTWMQWEKEIDNYTQHIYTLLEVSQIQQEKNEQELLELD
Envelope glycoprotein gp41 Z 153 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus AVGLGAFILGFLGAAGSTMGAASMALTVQARLLLSGIVQQQNNLLRAPEAQQHMLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKIICCTNVPWNDSWSNKTINEIWDNMTWMQWEKEIDNYTQHIYTLLEVSQIQQEKNEQELLELD
Envelope glycoprotein gp160 A 516 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAAKKWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCNNVNTNNTNNSTNATISDWEKMETGEMKNCSFNVTTSIRDKIKKEYALFYKLDVVPLENKNNINNTNITNYRLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNSKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENITDNAKTIIVQLNEAVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGNIRQAHCNISKARWNETLGQIVAKLEEQFPNKTIIFNHSSGGDPEIVTHSFNCGGEFFYCNTTPLFNSTWNNTRTDDYPTGGEQNITLQCRIKQIINMWQGVGKAMYAPPIRGQIRCSSNITGLLLTRDGGRDQNGTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTACKRRV
Envelope glycoprotein gp160 B 516 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAAKKWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCNNVNTNNTNNSTNATISDWEKMETGEMKNCSFNVTTSIRDKIKKEYALFYKLDVVPLENKNNINNTNITNYRLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNSKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENITDNAKTIIVQLNEAVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGNIRQAHCNISKARWNETLGQIVAKLEEQFPNKTIIFNHSSGGDPEIVTHSFNCGGEFFYCNTTPLFNSTWNNTRTDDYPTGGEQNITLQCRIKQIINMWQGVGKAMYAPPIRGQIRCSSNITGLLLTRDGGRDQNGTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTACKRRV
Envelope glycoprotein gp160 C 516 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAAKKWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCNNVNTNNTNNSTNATISDWEKMETGEMKNCSFNVTTSIRDKIKKEYALFYKLDVVPLENKNNINNTNITNYRLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNSKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENITDNAKTIIVQLNEAVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGNIRQAHCNISKARWNETLGQIVAKLEEQFPNKTIIFNHSSGGDPEIVTHSFNCGGEFFYCNTTPLFNSTWNNTRTDDYPTGGEQNITLQCRIKQIINMWQGVGKAMYAPPIRGQIRCSSNITGLLLTRDGGRDQNGTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTACKRRV
T-cell surface glycoprotein CD4 D 183 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS
T-cell surface glycoprotein CD4 E 183 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS
T-cell surface glycoprotein CD4 F 183 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS
CG10 Fab heavy chain H 228 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
CG10 Fab heavy chain I 228 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
CG10 Fab heavy chain P 228 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
CG10 Fab light chain L 218 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
CG10 Fab light chain J 218 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
CG10 Fab light chain Q 218 Homo Sapiens , Human Immunodeficiency Virus , Human Immunodeficiency Virus 1 , Mus Musculus DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-06-04
Deposition Author(s): Bjorkman, P.J. , Gershoni, J.M. , Yang, Z.