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FASTA Sequence PDB Format mmCIF Format
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8CYJ

Rbd of sars-cov-2 spike protein in complex with pan-sarbecovirus nanobodies 2-10, 2-67, 2-62 and 1-25

PDB DOI: 10.2210/pdb8cyj/pdb

Classification: VIRAL PROTEIN
Organism(s): Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2022-05-23
Deposition Author(s): Huang, W. , Taylor, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

8cyj
Literature

Rbd of sars-cov-2 spike protein in complex with pan-sarbecovirus nanobodies 2-10, 2-67, 2-62 and 1-25

Huang, W. , Taylor, D.

Primary Citation of Related Structures: 8CYJ


Proteins
Molecule Chains Sequence Length Organism Sequence
pan-sarbecovirus nanobody 2-67 A 127 Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVQTGGSLRLSCALSGYTFSIFPTAWFRQAPGKEREFVAGIRWNGSTRDYTEYADFVKGRFTISRDNAKNMVYLQMISLKPEDTALYYCAASDGVIDGTNANAYRYWGQGTQVTVSS
pan-sarbecovirus nanobody 1-25 B 125 Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 HVQLVESGGGLVQAGGSLRLSCATSGRTFSTYRMSWFRQAPGKEREFVATIIWSVGSTHYADSVKGRFTISRDNAKNMVYLQMNSLKPEDTAVYYCAAQRSDSSSWGYEDDYDYWGQGTQVTVSS
pan-sarbecovirus nanobody 2-10 C 128 Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGLVQPGGSLRLSCAASGFTFNRYAMSWVRQAPGKGREWVSGIYSDGSETYYTESVKGRFTISRDNAKNMLYLQMNSLKPEDTALYYCAKDENAHEDYFNSGFDRKYDYWGQGTQVTVSS
pan-sarbecovirus nanobody 2-62 D 127 Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGLVQAGGSLRLSCAASGRTFSTYAMAWFRQAPGKEREFVAGVARSADTTYYGDSVKGRFTISRDNAKNEVNLQMSSLKPEDTAVYYCAARSVIQYGIVPGNDFHYEYWGQGTQVTVSS
Spike glycoprotein R 1273 Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-05-23
Deposition Author(s): Huang, W. , Taylor, D.