8C89
Sars-cov-2 spike in complex with the 17t2 neutralizing antibody fab fragment (local refinement of rbd and fab)
PDB DOI: 10.2210/pdb8c89/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus
Deposited: 2023-01-19 Deposition Author(s): Arranz, R. , Blanco, J. , Bueno-Carrasco, M.T. , Carlero, D. , Carolis, C. , Magri, G. , Modrego, A. , Santiago, C.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.41 Å
Sars-cov-2 spike in complex with the 17t2 neutralizing antibody fab fragment (local refinement of rbd and fab)
Arranz, R. , Blanco, J. , Bueno-Carrasco, M.T. , Carlero, D. , Carolis, C. , Magri, G. , Modrego, A. , Santiago, C.
Primary Citation of Related Structures: 8C89
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spike protein S2' | C | 210 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus | ESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNL |
| 17T2 Fab heavy chain | H | 226 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus | QVQLVQSGPEVKKPGTSVKVSCKAPVFTFSISAVQWVRQARGQRLEWIGWIVVGSGNTNYAQNFQERVTITTDMSTGTVYMELSGLRSEDTAMYYCAAPYCNRTTCYDGFDLWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC |
| 17T2 Fab light chain | L | 216 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus | EIVLTQSPGTLSLSPGERATLSCRASQSISSNYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSINRLEPEDFAMYYCQHYGGLSRWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-01-19 Deposition Author(s): Arranz, R. , Blanco, J. , Bueno-Carrasco, M.T. , Carlero, D. , Carolis, C. , Magri, G. , Modrego, A. , Santiago, C.