PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8BSF

Crystal structure of sars-cov-2 receptor binding domain (rbd-beta variant) in complex with 3d2 fab

PDB DOI: 10.2210/pdb8bsf/pdb

Classification: VIRAL PROTEIN
Organism(s): Salmonella Enterica , Gammaretrovirus

Deposited: 2022-11-25
Deposition Author(s): Focht, D. , Kimbung, Y.R. , Pisitkun, T. , Welin, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.2 Å

8bsf
Literature

Crystal structure of sars-cov-2 receptor binding domain (rbd-beta variant) in complex with 3d2 fab

Focht, D. , Kimbung, Y.R. , Pisitkun, T. , Welin, M.

Primary Citation of Related Structures: 8BSF


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 231 Salmonella Enterica , Gammaretrovirus RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFSGHHHHHH
3D2 FAB HEAVY CHAIN H 231 Salmonella Enterica , Gammaretrovirus EVQLVQSGAEVKKPGDSLKISCKGSGYSFANYWIGWVRQKPGKGLEWMGIIYPGDSDTRYSPSSLGQVSISVDKSISTAYLQWSSLKASDTAMYYCARHPIHGYGSGSLYNPDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKT
3D2 FAB LIGHT CHAIN L 216 Salmonella Enterica , Gammaretrovirus QSVLTQPPSVSAAPGQKVTISCSGSNSNIGINYVSWYQQLPETAPKLLIYENNQRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDTSLGAYVFGTGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-11-25
Deposition Author(s): Focht, D. , Kimbung, Y.R. , Pisitkun, T. , Welin, M.