8AZW
Cryo-em structure of the plant 60s subunit
PDB DOI: 10.2210/pdb8azw/pdb
Classification: RIBOSOME Organism(s): Nicotiana Tabacum
Deposited: 2022-09-06 Deposition Author(s): Bock, R. , Buerger, J. , Kleinau, G. , Loerke, J. , Meyer, E.H. , Mielke, T. , Scheerer, P. , Schmidt, A. , Smirnova, J. , Spahn, C.M.T. , Zoschke, R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.14 Å
Cryo-em structure of the plant 60s subunit
Bock, R. , Buerger, J. , Kleinau, G. , Loerke, J. , Meyer, E.H. , Mielke, T. , Scheerer, P. , Schmidt, A. , Smirnova, J. , Spahn, C.M.T. , Zoschke, R.
Primary Citation of Related Structures: 8AZW
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| eL8 (60S ribosomal protein L7a) | C | 258 | Nicotiana Tabacum | MAPKKGVAVAAKKKPVQAKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPQVVRIQRKRRILKQRLKVPPSLNQFSKTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTPETKKPIIVKYGLKHITYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASALCLTTVKNEDKMEFSRILEAIKANFNDKYEENRKKWGGGVMGSKSQARTKAKERVLAKEAAQRMN |
| nascent chain | L | 24 | Nicotiana Tabacum | XXXXXXXXXXXXXXXXXXXXXXXX |
| uL24 (60S ribosomal protein L26) | M | 146 | Nicotiana Tabacum | MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLRTKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGIHPSKVVVTKLRLDKDRKSLLDRKAKGRAAADKDKGTKFTAEDIMQTVD |
| uL29 (60S ribosomal protein L35) | N | 123 | Nicotiana Tabacum | MARIKVHELRNKTKTELLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKTALREAYKNKKYLPLDLRPKKTRAIRKRLTKHQVSLKTEREKKKEMYFPIRKYAIKV |
| uL2 (60S ribosomal protein L8) | O | 260 | Nicotiana Tabacum | MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGVVSEIIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFIYCGKKANLMVGNVLALRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKA |
| eL41 (60S ribosomal protein L41) | P | 25 | Nicotiana Tabacum | MRAKWKKKRMRRLKRKRRKMRQRSK |
| uL30 (60S ribosomal protein L7) | Q | 242 | Nicotiana Tabacum | MGEGGVLVPESVLKKQKRSEEWALVKKQELEAAKKKNTENRKLIYNRAKQYAKEYEAQERELIQLKREARLKGGFYVDPEAKLLFIIRIRGINAMAPQTKKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSIRELIYKRGYGKVEKQRIALTDNSVIEQVLGKHGIICIEDLVHEIITVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN |
| uL3 (60S ribosomal protein L3) | R | 389 | Nicotiana Tabacum | MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCKLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVIVGVVGYVKTPRGLRCLNTVWAQHLSEELKRRFYKNWCKSKKKAFLKYSKKYETDEGKKDIQTQLEKLKKYACVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDFAYGFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKLGKAGQESHAAITDFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQSLLNQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA |
| uL4 (60S ribosomal protein L4) | S | 405 | Nicotiana Tabacum | MATAAAIPTTTVQSFENDMATDGAVPLPAVMKAPIRPDVVTYVHSNISKNARQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKIPVNQKRYAVASAIAASAVPSLVLARGHRIESVPELPLVVSDSVESIEKTSNAIKALKQIGAYPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEICHVDRLNLLKLAPGGHLGRFIVWTKSAYEKLDGIYGSFDKASEKKKGYVLPRPKMANADLARIINSDEVQSVVRPIKKDVNKRATLKKNPLKNLNVLLKLNPYAKTARRMSLLAEAQRVKAKKEKLDKKRHQVTKEEASAIRAAGTSWFKTMISDSDYTEFENFTKWLGVTQ |
| uL5 (60S ribosomal protein L11) | T | 181 | Nicotiana Tabacum | MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSSNIQ |
| uL6 (60S ribosomal protein L9) | U | 194 | Nicotiana Tabacum | MKTILSSETMDIPDGVNIKVKAKQIEVEGPRGKLTRNFKHLNLDFQLIKDEETGKKKLKIDAWFGSRKTTAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASISGGNKAIEIRNFLGEKRVRKVDMLEGVTVVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGRIVEEE |
| uL13 (60S ribosomal protein L13a) | D | 206 | Nicotiana Tabacum | MVSGSGISARRIVVDARHHMLGRLSSILAKELLNGQKVVVVRCEEICLSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYEGVPPPYDKIKRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELENKRKERAQVAYERRKQLAKLRVKAEKAAEEKLGPQLAIIAPIKY |
| eL37 (60S ribosomal protein L37) | V | 95 | Nicotiana Tabacum | MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARLRKYNWSVKALRRKTTGTGRMRYLRNVPRRFKTNFREGTEATPRKKGAAVAS |
| eL38 (60S ribosomal protein L38) | W | 69 | Nicotiana Tabacum | MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL |
| eL39 (60S ribosomal protein L39) | X | 51 | Nicotiana Tabacum | MPSHKTFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF |
| eL40 (60S ribosomal protein L40) | Y | 128 | Nicotiana Tabacum | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK |
| eL42 (60S ribosomal protein L42) | Z | 105 | Nicotiana Tabacum | MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF |
| uL14 (60S ribosomal protein L23) | E | 140 | Nicotiana Tabacum | MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV |
| eL15 (60S ribosomal protein L15) | F | 204 | Nicotiana Tabacum | MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYYEVILVDAAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGHLYHKNRPSRRGTWKRNQTLSLRRYR |
| eL18 (60S ribosomal protein L18) | G | 187 | Nicotiana Tabacum | MGIDLKAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKPPLSLSRLISYAKGKEDKVVVIVGTITDDVRAYEVPALKVCALRFTKTARARIEKAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVKHFGPAPGVPHSHTKPFVRSKGRKFERARGRRNSRGYKA |
| eL19 (60S ribosomal protein L19) | H | 214 | Nicotiana Tabacum | MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMENIHKTKAEKAREKTLSDQFEARRAKNKASRERKFARREERLAQGPVERPMQPAAPAASATPAQTAQGGSKKSKK |
| eL21 (60S ribosomal protein L21) | J | 164 | Nicotiana Tabacum | MPAGHGLRSRTRDSFSRAFRKKGTIPLSTYLRIFKIGDYVDIKVNGAIHKGMPHKFYHGRTGRVWNVTKRAVGVEVNKQVRNKILRKRIHVRIEHVQLSRCTEEVKERMKKNDQLKAEAKARGEVISTKRQPVGPKPGFMVEGATLETVTPIPYDVVNDLKGGY |
| eL22 (60S ribosomal protein L22) | K | 127 | Nicotiana Tabacum | MSKGSSGGGAMKGGKKKGATFVIDCSKPVEDKIMEIASLEKFLQERIKVGGKAGALGDSVTVTRDKTKITVTSDTTFSKRYLKYLTKKYLKKNNVRDWLRVISSNKDRNVYELRYFNIAENEAEEED |
| eL20 (60S ribosomal protein L18a) | I | 178 | Nicotiana Tabacum | MVTYKFHQYQVVGRALPTENDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRHHCIQIIKTATIPAKLCKRESTKQFHDSKIKFPLVFKKVRPPSRKLKTTYKATRPNLFM |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 25S rRNA | a | 3390 | NA | GCGACCCCAGGUCAGGCGGGACUACCCGCUGAGUUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACUUACAAGGAUUCCCCUAGUAACGGCGAGCGAACCGGGAACAGCCCAGCCUUAGAAUCGGGCGGCUCCGCCGUUCGAAUUGUAGUCUGGAGAAGCGUCCUCAGCGGCGGACCGGGCCCAAGUCCCCUGGAAGGGGGCGCCAGAGAGGGUGAGAGCCCCGUUGUGCCCGGACCCUGUCGCACCACGAGGCGCUGUCUACGAGUCGGGUUGUUUGGGAAUGCAGCCCAAAUCGGGCGGUGAAUUCCGUCCAAGGCUAAAUACGGGCGAGAGACCGAUAGCGAACAAGUACCGCGAGGGAAAGAUGAAAAGGACUUUGAAAAGAGAGUCAAAGAGUGCUUGAAAUUGUCGGGAGGGAAGCGGAUGGGGGCCGGCGAUGCGCCCCGGUCGGAUGUGGAACGGUGACGAGCCGGUCCGCCGAUCGACUCGGGGCGUGGACCAGCGUGGAUUGGGGGGGCGGCCAAAGCCCGGGCUUUCGAUACGCCCGUGGAACGCCGUCUCCUUGAUUGUGGUAGGCAGCGCGCGCCUCCGGCGUGCUUCGGCAUCUGCGCGCUCCGGACGCUGGCCUGUGGGCUCCCCAUUCGACCCGUCUUGAAACACGGACCAAGGAGUCUGACAUGUGUGCGAGUCAACGGGCGAGUAAACCCGUAAGGCGUAAGGAAGCUGAUUGGUGGGAUCCCCCUGAGGGGUGCACCGCCGACCGACCUUGAUCUUCUGUGAAGGGUUCGAGUGUGAGCAUACCUGUCGGGACCCGAAAGAUGGUGAACUAUGCCUGAGCGGGGCGAAGCCAGAGGAAACUCUGGUGGAGGCCCGCAGCGAUACUGACGUGCAAAUCGUUCGUCUGACUUGGGUAUAGGGGCGAAAGACUAAUCGAACCGUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGAGCUCGCGUGCGAGUUCUAUCGGGUAAAGCCAAUGAUUAGAGGCAUCGGGGGCGCAACGCCCUCGACCUAUUCUCAAACUUUAAAUAGGUAGGACGGUGCGGCUGCUUUGUUGAGCCGCACCACGGAAUCAAGAGCUCCAAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGGAAGCCGGGUUACGGUGCCAAACUGCGCGCUAACCUAGAUCCCACAAAGGGUGUUGGUCGAUUAAGACAGCAGGACGGUGGUCAUGGAAGUCGAAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCCGAAAAUGGAUGGCGCUUAAGCGCGCGACCUACACCCGGCCGUCGGGGCAAGUGCCAGGCCCCGAUGAGUAGGAGGGCGCGGCGGUCGCUGCAAAACCUUGGGCGCGAGCCUGGGCGGAGCGGCCGUCGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGGCCGAAGAGGGGAAAGGUUCCAUGUGAACGGCACUUGCACAUGGGUUAGUCGAUCCUAAGGGUCGGGGGAACCCCGACAGAUAGCGCGUUUCGCGCGUACUCCGAAAGGGAAUCGGGUUAAAAUUCCUGAACCGGGACGUGGCGGUUGACGGCAACGUUAGGAAGUCCGGAGACGUCGGCGGGGGCCUCGGGAAGAGUUAUCUUUUCUGUUUAACAGCCUGCCCACCCUGGAAACGACUCAGUCGGAGGUAGGGUCCAGCGGCUGGAAGAGCACCGCACGUCGCGUGGUGUCCGGUGCGCCCCCGGCGGCCCUUGAAAAUCCGGAGGACCGAGUGCCGUCCACGCCCGGUCGUACUCAUAACCGCAUCAGGUCUCCAAGGUGAACAGCCUCUGGUCGAUGGAACAAUGUAGGCAAGGGAAGUCGGCAAAAUGGAUCCGUAACUUCGGGAAAAGGAUUGGCUCUGAGGGCUGGGCACGGGGGUCCCAGUCCCGAACCCGUCGGCUGUCGGUGGACUGCUCGAGCUGCUCCCGCGGCGAGAGCGGGUCGCCGCGUGCCGGCCGGGGGACGGACUGGGAACGGUUCCUUCGGGGGCCUUCCCCGGGCGUCGAACAGCCAACUCAGAACUGGUACGGACAAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCCUGCGGAUGUUUACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUGUCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCCGACUUUGUGAAAUGACUUGAGAGGUGUAGUAUAAGUGGGAGCCGAAAGGCGAAAGUGAAAUACCACUACUUUUAACGUUAUUUUACUUAUUCCGUGAAUCGGAAGCGGGGCACUGCCCCUCUUUUUGGACCCAAGGCUUGCUUGCAGGCCGAUCCGGGCGGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAAAGAUAACGCAGGXGUCCUAAGAUGAGCUCAACGAGAACAGAAAUCUCGUGUGGAACAGAAGGGUAAAAGCUCGUUUGAUUCUGAUUUCCAGUACGAAUACGAACCGUGAAAGCGUGGCCUAACGAUCCUUUAGACCUUCGGAAUUCGAAGCUAGAGGUGUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGUGUUGGAUUGUUCACCCACCAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGACAGUGUCGCAAUAGUAAUUCAACCUAGUACGAGAGGAACCGUUGAUUCGCACAAUUGGUCAUCGCGCUUGGUUGAAAAGCCAGUGGCGCGAAGCUACCGUGCGCUGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCGGGCUAGAAGCGACGCAUGCGCCCGCCGUCCGCUUGCCGACCCGCAGUAGGGGCCUUUGGCCCCCAAGGGCACGUGUCGUUGGCUAAGUCAUCGUGGCGGAAGAGCCGCGGUGGCCGCCUUGAAGUACAAUUUCCAUCGAGCGGCGGGUAGAAUCCUUUGCAGACGACUUAAAUACGCGACGGGGUAUUGUAAGUGGCAGAGUGGCCUUGCUGCCACGAUCCACUGAGAUUCAGCCCUUUGUCGCUCCGAUUCGU |
| 5.8S rRNA | b | 163 | NA | AAACGACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUUCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAAGCCAUUAGGCCGAGGGCACGUCUGCCUGGGCGUCACGC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-09-06 Deposition Author(s): Bock, R. , Buerger, J. , Kleinau, G. , Loerke, J. , Meyer, E.H. , Mielke, T. , Scheerer, P. , Schmidt, A. , Smirnova, J. , Spahn, C.M.T. , Zoschke, R.