8AUV
Cryo-em structure of the plant 40s subunit
PDB DOI: 10.2210/pdb8auv/pdb
Classification: RIBOSOME Organism(s): Nicotiana Tabacum
Deposited: 2022-08-25 Deposition Author(s): Bock, R. , Buerger, J. , Kleinau, G. , Loerke, J. , Meyer, E.H. , Mielke, T. , Scheerer, P. , Schmidt, A. , Smirnova, J. , Spahn, C.M.T. , Zoschke, R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.38 Å
Cryo-em structure of the plant 40s subunit
Bock, R. , Buerger, J. , Kleinau, G. , Loerke, J. , Meyer, E.H. , Mielke, T. , Scheerer, P. , Schmidt, A. , Smirnova, J. , Spahn, C.M.T. , Zoschke, R.
Primary Citation of Related Structures: 8AUV
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| uS3 (40S ribosomal protein S3) | A | 248 | Nicotiana Tabacum | MDTPVTQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFKENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHILMRQGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHSPKEEEDYIRASVVVPDVVPTMLPTDIPIPVPVM |
| eS25 (40S ribosomal protein S25) | I | 107 | Nicotiana Tabacum | MAPKKAAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKATYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT |
| eS26 (40S ribosomal protein S26) | J | 127 | Nicotiana Tabacum | MTFKRRNGGRNKHGRGHTKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACAFETYTLPKLYLKMQYCVSCAIHSKVVRVRSVTDRRVREPPQRFRRPRDDLPKPGQAPRPTGGAPAAPRT |
| eS6 (40S ribosomal protein S6) | K | 249 | Nicotiana Tabacum | MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGDEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRNFTTKNGKKASKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRLSAASKPSIAA |
| eS10 (40S ribosomal protein S10) | L | 208 | Nicotiana Tabacum | MVQSFCCCNRLWLQCDFSPLSPLLPAAMIISEKNRREISKYLFQEGVCYAKKDYNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPLGRPMGGPPGDRPRGPPRFEGDRPRFGDREGYRAGPRGPPGEFGGEKGGAPADYQPAFRGSGGRPGFGRGSGGFGGAPPSSSFS |
| eS30 (40S ribosomal protein S30) | M | 62 | Nicotiana Tabacum | MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK |
| eS31 (ubiquitin-40S ribosomal protein S27a) | N | 156 | Nicotiana Tabacum | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD |
| eS7 (40S ribosomal protein S7) | O | 191 | Nicotiana Tabacum | MYTSRQKIHKDKDAEPTEFEESVAQALFDMENTNQELKSELKDLYINSAVQIDVSGNKKAVVIHVPYRLRKAFRKIHVRLVRELEKKFSGKDVIFIATRRIARPPKRGSAAQRPRSRTLTSVHDAILEDVVVPAEIVGKRVRYRVDGSKIMKVFLDPKERNNTEYKLETFSAVYRKLSGKDVVFEYPITEA |
| eS8 (40S ribosomal protein S8) | P | 224 | Nicotiana Tabacum | MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISANKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKGPAKKETTEEGEGAAAAAEETKKSNHVLRKIETRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKAGAGGAA |
| RACK1 (guanine nucleotide-binding protein subunit beta-like protein) | Q | 328 | Nicotiana Tabacum | MAQESLVLRGTMKAHTDWVTAIATPIDNSDMIVTSSRDKSLIVWSLTKDGPQYGVPRRRLTGHGHFVQDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSVDNRQIVSASRDKTIKLWNTLGECKYTIQEGDSHSDWVSCVRFSPNTLQPTIVSGSWDRTVKIWNLTNCKLRSTLAGHAGYVNTVAVSPDGSLCASGGKDGTILLWDLAEGKKLYSLDAGSIIHALCFSPNRYWLCAATETSIKIWDLESKSIVVDLKVDLKQESEMATEGTTGSACKNKIMYCTCLSWSADGSTLFSGYTDGLIRVWGIGRY |
| uS10 (40S ribosomal protein S20) | R | 122 | Nicotiana Tabacum | MAYAAMKATKPGLEEPQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADS |
| uS11 (40S ribosomal protein S14) | S | 150 | Nicotiana Tabacum | MSKRRTREPKEETVTLGPATREGELVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL |
| uS12 (40S ribosomal protein S23) | T | 142 | Nicotiana Tabacum | MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS |
| uS13 (40S ribosomal protein S18) | U | 152 | Nicotiana Tabacum | MSLVANEEFQHILRVQNTNVDGKQKIMFAMTSIKGIGRRFANIACKKADIDMNKRAGELSAAELDSLMVVVANPRQFKIPDWFLNRQKDYKDGKFSQVTSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR |
| uS14 (40S ribosomal protein S29) | V | 56 | Nicotiana Tabacum | MGHSNIWNAHPKNYGPGSRTCRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFIKYR |
| uS15 (40S ribosomal protein S13) | W | 151 | Nicotiana Tabacum | MGRMHSRGKGISASALPYKRTPPSWLKISAPDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA |
| uS17 (40S ribosomal protein S11) | X | 159 | Nicotiana Tabacum | MAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSAGGGKKAFTGM |
| uS19 (40S ribosomal protein S15) | Y | 152 | Nicotiana Tabacum | MADVEGADVAAGQPKKRTFKKFSYRGVDLDALLDMSTDELVKLFPARPRRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK |
| uS2 (40S ribosomal protein SA) | Z | 336 | Nicotiana Tabacum | MAAEGRTLSTKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGVLFWLLARMVLQMRGSINQGHKWDVMVDLFFYREPEEAKEQQEEEAPAIDYADYSAGGDWSSSQIPEAQWTGDAAPSGPVVASGWSGEGVAEGGGWDTAAAPVPVPVSDAAPTAGGGWDTAAAPVPVPVSDAAPTAGGGWDTAAAPVPVPVSDAAPTAGATGWE |
| eS12 (40S ribosomal protein S12) | C | 144 | Nicotiana Tabacum | MSGEDAAVPVVAAAETPAPALGEPMDIMTALQLVLKKSKAHGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCADHNVSLITVPNAKTLGEWAGLCKIDSEGKARKVVGCGCVVVKDYGEETEGLHIVQEYVKSH |
| eS17 (40S ribosomal protein S17) | D | 149 | Nicotiana Tabacum | MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIQTDRIEVDKETIDLLASLGMSELPGVVLKEEQPVAIAAPVGFGGRGGFGGAGGRRGGY |
| eS19 (40S ribosomal protein S19) | E | 143 | Nicotiana Tabacum | MEAARTVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDPDWYYIRAASMARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARNILQQLQNMNIVDFDPKGGRRITSNGQRDLDQVAGRIAAAL |
| eS1 (40S ribosomal protein S3a) | F | 261 | Nicotiana Tabacum | MAVGKNKRISKGKKGGKKKAADPYAKKDWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA |
| eS21 (40S ribosomal protein S21) | G | 83 | Nicotiana Tabacum | MQNEEGQNVDLYIPRKCSATNRVITSKDHASVQLNVGHLDDKGLYIPGSFTTFALCGFIRAQGDADSALDRLWQKKKVEARQQ |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 18S rRNA | h | 1808 | NA | UACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGUAAGUAUGAACAAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUAGUUUGUUUGAUGGUAUCUACUACUCGGAUAACCGUAGUAAUUCUAGAGCUAAUACGUGCAACAAACCCCGACUUCUGGAAGGGAUGCAUUUAUUAGAUAAAAGGUCGACGCGGGCUCUGCCCGUUGCUGCGAUGAUUCAUGAUAACUCGACGGAUCGCACGGCCAUCGUGCCGGCGACGCAUCAUUCAAAUUUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUGACGGGUGACGGAGAAUUAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCAAUCCUGACACGGGGAGGUAGUGACAAUAAAUAACAAUACCGGGCUCUAUGAGUCUGGUAAUUGGAAUGAGUACAAUCUAAAUCCCUUAACGAGGAUCCAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAXAUUUAAGUUGUUGCAGUUAAAAAGCUCGUAGUUGGACUUUGGGAUGGGCCGGCCGGUCCGCCUUAGGUGUGCACCGGUCGUCUCGUCCCUUCUGCCGGCGAUGCGCUCCUGGCCUUAAUUGGCCGGGUCGUGCCUCCGGCGCUGUUACUUUGAAGAAAUUAGAGUGCUCAAAGCAAGCCUACGCUCUGUAUACAUUAGCAUGGGAUAACAUUAUAGGAUUUCGGUCCUAUUACGUUGGCCUUCGGGAUCGGAGUAAUGAUUAACAGGGACAGUCGGGGGCAUUCGUAUUUCAUAGUCAGAGGUGAAAUUCUUGGAUUUAUGAAAGACGAACAACUGCGAAAGCAUUUGCCAAGGAUGUUUUCAUUAAUCAAGAACGAAAGUUGGGGGCUCGAAGACGAUCAGAUACCGUCCUAGUCUCAACCAUAAACGAUGCCGACCAGGGAUCGGCGGAUGUUGCUUUUAGGACUCCGCCGGCACCUUAUGAGAAAUCAAAGUUUUUGGGUUCCGGGGGGAGUAUGGUCGCAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACXCAACACGGGGAAACUUACCAGGUCCAGACAUAGUAAGGAUUGACAGACUGAGAGCUCUUUCUUGAUUCUAUGGGUGGUGGUGCAUGGCNGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCUCAGCCUGCUAACUAGCUAUGCGGAGGUAUCCCUUCGCGGCCAGCUUCUUAGAGGGACUACGGCCUUUUAGGCCGCGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUUCUGGGCCGCACGCGCGCUACACUGAUGUAUUCAACGAGUUUAUAGCCUUGGCCGACAGGCCCGGGUAAUCUUUGAAAUUUCAUCGUGAUGGGGAUAGAUCAUUGCAAUUGUUGGUCUUCAACGAGGAAUUCCUAGUAAGCGCGAGUCAUCAGCUCGCGUUGACUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUCCUACCGAUUGAAUGAUCCGGUGAAAUGUUCGGAUCGCGGCGACGUGGGCGGUUCGCUGCCCGCGACGUCGCGAGAAGUCCAUUGAACCUUAUCAUUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCNGUAGGUGAACCUGCGGAAGGAUCAUUG |
| mRNA | b | 12 | NA | UUUUUUUUUUUU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-08-25 Deposition Author(s): Bock, R. , Buerger, J. , Kleinau, G. , Loerke, J. , Meyer, E.H. , Mielke, T. , Scheerer, P. , Schmidt, A. , Smirnova, J. , Spahn, C.M.T. , Zoschke, R.