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8A67

Branched lys48- and lys63-linked tri-ubiquitin (k48-k63-ub3) in complex with matured synthetic nanobody nbsl3.3q (3rd generation)

PDB DOI: 10.2210/pdb8a67/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2022-06-16
Deposition Author(s): Kulathu, Y. , Lange, S.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.86 Å

8a67
Literature

Branched lys48- and lys63-linked tri-ubiquitin (k48-k63-ub3) in complex with matured synthetic nanobody nbsl3.3q (3rd generation)

Kulathu, Y. , Lange, S.M.

Primary Citation of Related Structures: 8A67


Proteins
Molecule Chains Sequence Length Organism Sequence
Polyubiquitin-B A 72 Homo Sapiens , Synthetic Construct MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Polyubiquitin-B E 72 Homo Sapiens , Synthetic Construct MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Polyubiquitin-B B 76 Homo Sapiens , Synthetic Construct MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG
Polyubiquitin-B C 76 Homo Sapiens , Synthetic Construct MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG
Polyubiquitin-B F 76 Homo Sapiens , Synthetic Construct MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG
Polyubiquitin-B G 76 Homo Sapiens , Synthetic Construct MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG
Synthetic Nanobody NbSL3.3Q D 148 Homo Sapiens , Synthetic Construct MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGSIFDLGVMGWYRQAPGKEREQVAGIDYGGVTNYADSVKGRFTISRDNDTVYLQMNSLKPEDTAVYYCAAGIVGDEVGWIYYLYWGQGTQVTVSSHHHHHH
Synthetic Nanobody NbSL3.3Q H 148 Homo Sapiens , Synthetic Construct MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGSIFDLGVMGWYRQAPGKEREQVAGIDYGGVTNYADSVKGRFTISRDNDTVYLQMNSLKPEDTAVYYCAAGIVGDEVGWIYYLYWGQGTQVTVSSHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-06-16
Deposition Author(s): Kulathu, Y. , Lange, S.M.