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7YFQ

Cryo-em structure of the efpiwi (n959k)-pirna-target ternary complex

PDB DOI: 10.2210/pdb7yfq/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Thiobacillus Denitrificans , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2022-07-08
Deposition Author(s): Li, Z.Q. , Liu, H.B. , Shen, E.Z. , Wu, J.P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

7yfq
Literature

Cryo-em structure of the efpiwi (n959k)-pirna-target ternary complex

Li, Z.Q. , Liu, H.B. , Shen, E.Z. , Wu, J.P.

Primary Citation of Related Structures: 7YFQ


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
piRNA b 25 NA UUACCAUCAACAUGGAAACUUGGCU
RNA (5'-R(*UP*CP*CP*AP*UP*GP*UP*UP*GP*AP*UP*GP*GP*UP*AP*A)-3') c 16 NA UCCAUGUUGAUGGUAA

Proteins
Molecule Chains Sequence Length Organism Sequence
Piwi A 806 Thiobacillus Denitrificans , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MDYKDDDDKGSDYKDDDDKGSDYKDDDDKGSENLYFQGSLNVESSMVSQRGSSGQPVPVSANYLPLKGNMDGVFKYAVGFNPPVEDIRSRSQLLNEHKELIGLTRVFDGSTLYVPKRICEQRLDLMSTRQTDGASIKVTISLVDSVKNRDVVQLMNVIFKRILRSLKLQRIGRDYYDANSPLEVPQHKMQLWPGYVTAINRHEGGLMLVLDVSHRVMKTDTALDFLYELYHFNQDKFREEAFKQLVGSVVLTRYNNRTYEIDDIAWDKNPRCAFQDHAGSQITFVDYYKRAYDLDITDLEQPLLIHRPKKKQRGKQDEGRKEVEEMVCLVPELCAMTGLTDAARSDFKVMKDLAVHTRVPPEKRAESFRKFIQRLNTTKEASELLHSWGLVLDSRMLDMQGRRLPPEKILFKHSSIVANMEADWSRECLKEHVISAVSLLDWAVLFVRKDQGKATDFVNMLSKVCPPIGMEVHEPKMVEVVNDRTESYLRALRELIAPRLQMVVIVFPTSRDDRYSAVKKLCCIESPIPSQVLIARTITQQQKLRSVAQKVALQMNAKLGGELWAVEIPLKSCMVVGIDVYHDKSYGNKSIAGFVASTNPSFTRWYSRTAMQEQSQELIHELKLCMQAALKKYNEMNQSLPERIIVFRDGVGEGREEYVSEFEVPQFNSCFSIFGENYCPKLAVVVVQKRITTRIFGRSGHSYDNPPPGVIVDHTITKSYDFYLVSQHVRQGTVSPTYYRVIYDKSGLKPDHLQRLTYKLTHMYYNWPGTIRTPAPCKYAHKLAFLVGKSLHRDPAHELSDRLFFL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-08
Deposition Author(s): Li, Z.Q. , Liu, H.B. , Shen, E.Z. , Wu, J.P.