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7YAD

Cryo-em structure of s309-rbd-rbd-s309 in the s309-bound omicron spike protein (local refinement)

PDB DOI: 10.2210/pdb7yad/pdb

Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2022-06-27
Deposition Author(s): Gao, F. , Qi, J.X. , Xie, Y.F. , Zhao, Z.N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.66 Å

7yad
Literature

Cryo-em structure of s309-rbd-rbd-s309 in the s309-bound omicron spike protein (local refinement)

Gao, F. , Qi, J.X. , Xie, Y.F. , Zhao, Z.N.

Primary Citation of Related Structures: 7YAD


Proteins
Molecule Chains Sequence Length Organism Sequence
S309 neutralizing antibody heavy chain A 126 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVS
S309 neutralizing antibody heavy chain C 126 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVS
S309 neutralizing antibody light chain B 108 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVEIKR
S309 neutralizing antibody light chain D 108 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVEIKR
Spike protein S1 M 200 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 PNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKK
Spike protein S1 E 200 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 PNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-06-27
Deposition Author(s): Gao, F. , Qi, J.X. , Xie, Y.F. , Zhao, Z.N.