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7Y7I

Chicken knl2 in complex with the cenp-a nucleosome

PDB DOI: 10.2210/pdb7y7i/pdb

Classification: NUCLEAR PROTEIN/DNA
Organism(s): Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2022-06-22
Deposition Author(s): Ariyoshi, M. , Fukagawa, T. , Jiang, H. , Makino, F.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.42 Å

7y7i
Literature

Chicken knl2 in complex with the cenp-a nucleosome

Ariyoshi, M. , Fukagawa, T. , Jiang, H. , Makino, F.

Primary Citation of Related Structures: 7Y7I


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1,Histone H3-like centromeric protein A A 144 Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRRQPFARVVREICLLFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQLARRLRGLQGEGF
Histone H3.1,Histone H3-like centromeric protein A E 144 Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRRQPFARVVREICLLFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQLARRLRGLQGEGF
Histone H4 B 106 Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 106 Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E C 130 Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E G 130 Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-J D 129 Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-J H 129 Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Myb-like domain-containing protein K 44 Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SSNGIYTRSGRLVKPPLSFWCGEREFVDRELNVTIQKGGTDYLS
Myb-like domain-containing protein L 44 Caldanaerobius , Salmonella Enterica , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) SSNGIYTRSGRLVKPPLSFWCGEREFVDRELNVTIQKGGTDYLS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Chains: I i 143 NA TCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGAGTCAGATATATACATCGA
Chains: J j 143 NA TCGATGTATATATCTGACTCGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-06-22
Deposition Author(s): Ariyoshi, M. , Fukagawa, T. , Jiang, H. , Makino, F.