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FASTA Sequence PDB Format mmCIF Format
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7XVM

Crystal structure of nucleosome-h5 linker histone assembly (sticky-169a dna fragment)

PDB DOI: 10.2210/pdb7xvm/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Gallus Gallus , Homo Sapiens , Synthetic Construct

Deposited: 2022-05-24
Deposition Author(s): Adhireksan, Z. , Davey, C.A. , Lee, P.L. , Padavattan, S. , Qiuye, B. , Sharma, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.84 Å

Literature

Crystal structure of nucleosome-h5 linker histone assembly (sticky-169a dna fragment)

Adhireksan, Z. , Davey, C.A. , Lee, P.L. , Padavattan, S. , Qiuye, B. , Sharma, D.

Primary Citation of Related Structures: 7XVM


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 138 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 138 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 K 138 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 O 138 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 105 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 105 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 L 105 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 P 105 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E C 132 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E G 132 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E M 132 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E Q 132 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-J D 128 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-J H 128 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-J N 128 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-J R 128 Gallus Gallus , Homo Sapiens , Synthetic Construct GSMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H5 U 190 Gallus Gallus , Homo Sapiens , Synthetic Construct STESLVLSPAPAKPKRVKASRRSASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKSDKAKRSPGKKKKAVRRSTSPKKAARPRKARSPAKKPKATARKARKKSRASPKKAKKPKTVKAKSRKASKAKKVKRSKPRAKSGARKSPKKK
Histone H5 V 190 Gallus Gallus , Homo Sapiens , Synthetic Construct STESLVLSPAPAKPKRVKASRRSASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKSDKAKRSPGKKKKAVRRSTSPKKAARPRKARSPAKKPKATARKARKKSRASPKKAKKPKTVKAKSRKASKAKKVKRSKPRAKSGARKSPKKK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (169-MER) i 169 NA GCTTTTTTTTTTCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGAAAAAAAAAAGCTGCA
DNA (169-MER) s 169 NA GCTTTTTTTTTTCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGAAAAAAAAAAGCTGCA
DNA (169-MER) j 169 NA GCTTTTTTTTTTCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGAAAAAAAAAAGCTGCA
DNA (169-MER) t 169 NA GCTTTTTTTTTTCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGAAAAAAAAAAGCTGCA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-05-24
Deposition Author(s): Adhireksan, Z. , Davey, C.A. , Lee, P.L. , Padavattan, S. , Qiuye, B. , Sharma, D.