7XJG
Cryo-em structure of e.coli retron-ec86 in complex with its effector at 2.5 angstrom
PDB DOI: 10.2210/pdb7xjg/pdb
Classification: RNA BINDING PROTEIN/DNA/RNA Organism(s): Escherichia Coli
Deposited: 2022-04-17 Deposition Author(s): Guan, Z.Y. , Wang, Y.J. , Zou, T.T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.51 Å
Cryo-em structure of e.coli retron-ec86 in complex with its effector at 2.5 angstrom
Guan, Z.Y. , Wang, Y.J. , Zou, T.T.
Primary Citation of Related Structures: 7XJG
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA-directed DNA polymerase from retron EC86 | A | 330 | Escherichia Coli | MKSAEYLNTFRLRNLGLPVMNNLHDMSKATRISVETLRLLIYTADFRYRIYTVEKKGPEKRMRTIYQPSRELKALQGWVLRNILDKLSSSPFSIGFEKHQSILNNATPHIGANFILNIDLEDFFPSLTANKVFGVFHSLGYNRLISSVLTKICCYKNLLPQGAPSSPKLANLICSKLDYRIQGYAGSRGLIYTRYADDLTLSAQSMKKVVKARDFLFSIIPSEGLVINSKKTCISGPRSQRKVTGLVISQEKVGIGREKYKEIRAKIHHIFCGKSSEIEHVRGWLSFILSVDSKSHRRLITYISKLEKKYGKNPLNKAKTLEHHHHHHHH |
| RNA-directed DNA polymerase from retron EC86 | B | 330 | Escherichia Coli | MKSAEYLNTFRLRNLGLPVMNNLHDMSKATRISVETLRLLIYTADFRYRIYTVEKKGPEKRMRTIYQPSRELKALQGWVLRNILDKLSSSPFSIGFEKHQSILNNATPHIGANFILNIDLEDFFPSLTANKVFGVFHSLGYNRLISSVLTKICCYKNLLPQGAPSSPKLANLICSKLDYRIQGYAGSRGLIYTRYADDLTLSAQSMKKVVKARDFLFSIIPSEGLVINSKKTCISGPRSQRKVTGLVISQEKVGIGREKYKEIRAKIHHIFCGKSSEIEHVRGWLSFILSVDSKSHRRLITYISKLEKKYGKNPLNKAKTLEHHHHHHHH |
| retron St85 family effector protein | C | 307 | Escherichia Coli | MNKKFTDEQQQQLIGHLTKKGFYRGANIKITIFLCGGDVANHQSWRHQLSQFLAKFSDVDIFYPEDLFDDLLAGQGQHSLLSLENILAEAVDVIILFPESPGSFTELGAFSNNENLRRKLICIQDAKFKSKRSFINYGPVRLLRKFNSKSVLRCSSNELKEMCDSSIDVARKLRLYKKLMASIKKVRKENKVSKDIGNILYAERFLLPCIYLLDSVNYRTLCELAFKAIKQDDVLSKIIVRSVVSRLINERKILQMTDGYQVTALGASYVRSVFDRKTLDRLRLEIMNFENRRKSTFNYDKIPYAHP |
| retron St85 family effector protein | J | 307 | Escherichia Coli | MNKKFTDEQQQQLIGHLTKKGFYRGANIKITIFLCGGDVANHQSWRHQLSQFLAKFSDVDIFYPEDLFDDLLAGQGQHSLLSLENILAEAVDVIILFPESPGSFTELGAFSNNENLRRKLICIQDAKFKSKRSFINYGPVRLLRKFNSKSVLRCSSNELKEMCDSSIDVARKLRLYKKLMASIKKVRKENKVSKDIGNILYAERFLLPCIYLLDSVNYRTLCELAFKAIKQDDVLSKIIVRSVVSRLINERKILQMTDGYQVTALGASYVRSVFDRKTLDRLRLEIMNFENRRKSTFNYDKIPYAHP |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (105-MER) | d | 105 | NA | GAAAGTTGCGCACCCTTACGTCAGAAAAAACGGGTTTCCTGGTTGGCTCGGAGAGCATCAGGCGATGCTCTCCGTTCCAACAAGGAAAACAGACAGTAACTCAGA |
| DNA (105-MER) | g | 105 | NA | GAAAGTTGCGCACCCTTACGTCAGAAAAAACGGGTTTCCTGGTTGGCTCGGAGAGCATCAGGCGATGCTCTCCGTTCCAACAAGGAAAACAGACAGTAACTCAGA |
| RNA (81-MER) | e | 81 | NA | UGCGCACCCUUAGCGAGAGGUUUAUCAUUAAGGUCAACCUCUGGAUGUUGUUUCGGCAUCCUGCAUUGAAUCUGAGUUACU |
| RNA (81-MER) | h | 81 | NA | UGCGCACCCUUAGCGAGAGGUUUAUCAUUAAGGUCAACCUCUGGAUGUUGUUUCGGCAUCCUGCAUUGAAUCUGAGUUACU |
| RNA (14-MER) | f | 14 | NA | CGUAAGGGUGCGCA |
| RNA (14-MER) | i | 14 | NA | CGUAAGGGUGCGCA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-04-17 Deposition Author(s): Guan, Z.Y. , Wang, Y.J. , Zou, T.T.