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7WLR

Cryo-em structure of the nucleosome containing komagataella pastoris histones

PDB DOI: 10.2210/pdb7wlr/pdb

Classification: GENE REGULATION/DNA
Organism(s): Simian Foamy Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2022-01-13
Deposition Author(s): Fukushima, Y. , Hatazawa, S. , Hirai, S. , Kujirai, T. , Kurumizaka, H. , Takizawa, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.54 Å

7wlr
Literature

Cryo-em structure of the nucleosome containing komagataella pastoris histones

Fukushima, Y. , Hatazawa, S. , Hirai, S. , Kujirai, T. , Kurumizaka, H. , Takizawa, Y.

Primary Citation of Related Structures: 7WLR


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 99 Simian Foamy Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) KPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDILLARRLRGERS
Histone H3 E 99 Simian Foamy Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) KPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDILLARRLRGERS
Histone H4 B 87 Simian Foamy Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) KRHRKILRDNIQGITKPAIRRLARRGGVKRISALIYEEVRAVLKTFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
Histone H4 F 87 Simian Foamy Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) KRHRKILRDNIQGITKPAIRRLARRGGVKRISALIYEEVRAVLKTFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
Histone H2A C 108 Simian Foamy Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) KASTSRSSKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIQSELLPKK
Histone H2A G 108 Simian Foamy Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) KASTSRSSKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIQSELLPKK
Histone H2B D 99 Simian Foamy Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) RSKVRKESYASYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLASYNKKSTISAREIQTAVRLILPGELSKHAVSEGTRAVTKYTSSTQA
Histone H2B H 99 Simian Foamy Virus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) RSKVRKESYASYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLASYNKKSTISAREIQTAVRLILPGELSKHAVSEGTRAVTKYTSSTQA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (145-MER) i 145 NA ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
DNA (145-MER) j 145 NA ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-01-13
Deposition Author(s): Fukushima, Y. , Hatazawa, S. , Hirai, S. , Kujirai, T. , Kurumizaka, H. , Takizawa, Y.