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FASTA Sequence PDB Format mmCIF Format
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7VYR

Crystal structure of sars-cov-2 spike rbd in complex with the d27 neutralizing antibody fab fragment

PDB DOI: 10.2210/pdb7vyr/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2021-11-15
Deposition Author(s): Jeong, B.-S. , Oh, B.-H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.2 Å

7vyr
Literature

Crystal structure of sars-cov-2 spike rbd in complex with the d27 neutralizing antibody fab fragment

Jeong, B.-S. , Oh, B.-H.

Primary Citation of Related Structures: 7VYR


Proteins
Molecule Chains Sequence Length Organism Sequence
D27 heavy chain H 252 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 MEWSWVFLFFLSVTTGVLSQVQLQQSGAEVKKPGSSVKVSCKASGGTFGNWSISWVRQAPGQGLEWMGGIDPSRGEATYAQKFQGRVTITTDESTSTAYMELSSLRSEDTAVYYCARETEQGGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHHHHHHHHH
D27 heavy chain A 252 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 MEWSWVFLFFLSVTTGVLSQVQLQQSGAEVKKPGSSVKVSCKASGGTFGNWSISWVRQAPGQGLEWMGGIDPSRGEATYAQKFQGRVTITTDESTSTAYMELSSLRSEDTAVYYCARETEQGGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHHHHHHHHH
D27 light chain L 238 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 MGIKMETHSQVFVYMLLWLSGVEGSYELTQPPSVSVAPGKTARITCGGNNIGRKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVYDLFSDYVFGTGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
D27 light chain B 238 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 MGIKMETHSQVFVYMLLWLSGVEGSYELTQPPSVSVAPGKTARITCGGNNIGRKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVYDLFSDYVFGTGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Spike protein S1 R 262 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 MVLVNQSHQGFNKEHTSKMVSAIVLYVLLAAAAHSAFAARVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
Spike protein S1 C 262 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 MVLVNQSHQGFNKEHTSKMVSAIVLYVLLAAAAHSAFAARVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-11-15
Deposition Author(s): Jeong, B.-S. , Oh, B.-H.